View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18543_low_1 (Length: 577)

Name: NF18543_low_1
Description: NF18543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18543_low_1
NF18543_low_1
[»] chr2 (23 HSPs)
chr2 (17-379)||(30078104-30078466)
chr2 (17-354)||(30019577-30019914)
chr2 (17-354)||(30040781-30041118)
chr2 (17-354)||(30110259-30110596)
chr2 (17-354)||(30234919-30235256)
chr2 (128-353)||(30136896-30137121)
chr2 (128-264)||(30045941-30046077)
chr2 (477-566)||(30020147-30020236)
chr2 (477-566)||(30078565-30078654)
chr2 (477-566)||(30103407-30103496)
chr2 (477-566)||(30121636-30121725)
chr2 (477-566)||(30136641-30136730)
chr2 (477-566)||(30040459-30040548)
chr2 (477-566)||(30109937-30110026)
chr2 (477-566)||(30234597-30234686)
chr2 (341-379)||(30020000-30020038)
chr2 (341-379)||(30040657-30040695)
chr2 (341-379)||(30110135-30110173)
chr2 (341-379)||(30121833-30121871)
chr2 (341-379)||(30234795-30234833)
chr2 (341-377)||(30136832-30136868)
chr2 (131-177)||(39324796-39324842)
chr2 (132-177)||(42352251-42352296)
[»] chr8 (1 HSPs)
chr8 (131-191)||(3771638-3771698)
[»] chr5 (7 HSPs)
chr5 (121-206)||(41982520-41982605)
chr5 (131-177)||(4650341-4650387)
chr5 (131-172)||(38734692-38734733)
chr5 (131-177)||(2858210-2858256)
chr5 (131-172)||(2846389-2846430)
chr5 (158-203)||(29302550-29302595)
chr5 (143-203)||(3082689-3082748)
[»] chr6 (3 HSPs)
chr6 (121-171)||(33940956-33941006)
chr6 (137-214)||(2308372-2308448)
chr6 (131-177)||(27991927-27991973)
[»] chr1 (3 HSPs)
chr1 (120-206)||(8245431-8245517)
chr1 (131-206)||(42106999-42107074)
chr1 (131-193)||(1035397-1035458)
[»] chr7 (2 HSPs)
chr7 (125-191)||(38735907-38735973)
chr7 (120-173)||(31446665-31446718)
[»] chr4 (2 HSPs)
chr4 (131-177)||(34121090-34121136)
chr4 (120-177)||(38516122-38516179)
[»] chr3 (2 HSPs)
chr3 (130-206)||(25750837-25750914)
chr3 (141-234)||(49222430-49222523)


Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 379
Target Start/End: Original strand, 30078104 - 30078466
Alignment:
Q  17 attaaggcaccatcttagagaaagagtggttgctctttttatacgagaagaatcccaactacagacttagaacaagaacctaaattctttctcttgcaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30078104 attaaggcaccatcttagagaaagagtggttgctctttttatacgagaagaatcccaactacagacttagaacaagaacctaaattctttctcttgcaat 30078203  T
Q  117 attgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttatttta 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  30078204 attgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaaaattgtttaattta 30078303  T
Q  217 tgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcatttcagtgatataaaacactcattagcaaatt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30078304 tgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcatttcagtgatataaaacactcattagcaaatt 30078403  T
Q  317 tgacctaattgtattcattgttttaaatcaactaacagctaacaaataagagatggcaataga 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30078404 tgacctaattgtattcattgttttaaatcaactaacagctaacaaataagagatggcaataga 30078466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 354
Target Start/End: Original strand, 30019577 - 30019914
Alignment:
Q  17 attaaggcaccatcttagagaaagagtggttgctctttttatacgagaagaatcccaactacagacttagaacaagaacctaaattctttctcttgcaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30019577 attaaggcaccatcttagagaaagagtggttgctctttttatacgagaagaatcccaactacagacttagaacaagaacctaaattctttctcttgcaat 30019676  T
Q  117 attgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttatttta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30019677 attgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttatttta 30019776  T
Q  217 tgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcatttcagtgatataaaacactcattagcaaatt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30019777 tgttgtgattatagaagacttacacttaataaactaatccataaatatcaatattattttagttttcattttagtgatataaaacactcattagcaaatt 30019876  T
Q  317 tgacctaattgtattcattgttttaaatcaactaacag 354  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30019877 tgacctaattgtattcattgttttaaatcaactaacag 30019914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 354
Target Start/End: Complemental strand, 30041118 - 30040781
Alignment:
Q  17 attaaggcaccatcttagagaaagagtggttgctctttttatacgagaagaatcccaactacagacttagaacaagaacctaaattctttctcttgcaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30041118 attaaggcaccatcttagagaaagagtggttgctctttttatacgagaagaatcccaactacagacttagaacaagaacctaaattctttctcttgcaat 30041019  T
Q  117 attgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttatttta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30041018 attgagaaaaaacttaaatgatgttgattgatgtgatcaaattatttttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttatttta 30040919  T
Q  217 tgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcatttcagtgatataaaacactcattagcaaatt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30040918 tgttgtgattatagaagacttacacttaataaactaatccataaatatcaatattattttagttttcattttagtgatataaaacactcattagcaaatt 30040819  T
Q  317 tgacctaattgtattcattgttttaaatcaactaacag 354  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30040818 tgacctaattgtattcattgttttaaatcaactaacag 30040781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 354
Target Start/End: Complemental strand, 30110596 - 30110259
Alignment:
Q  17 attaaggcaccatcttagagaaagagtggttgctctttttatacgagaagaatcccaactacagacttagaacaagaacctaaattctttctcttgcaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30110596 attaaggcaccatcttagagaaagagtggttgctctttttatacgagaagaatcccaactacagacttagaacaagaacctaaattctttctcttgcaat 30110497  T
Q  117 attgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttatttta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30110496 attgagaaaaaacttaaatgatgttgattgatgtgatcaaattatttttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttatttta 30110397  T
Q  217 tgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcatttcagtgatataaaacactcattagcaaatt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30110396 tgttgtgattatagaagacttacacttaataaactaatccataaatatcaatattattttagttttcattttagtgatataaaacactcattagcaaatt 30110297  T
Q  317 tgacctaattgtattcattgttttaaatcaactaacag 354  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30110296 tgacctaattgtattcattgttttaaatcaactaacag 30110259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 354
Target Start/End: Complemental strand, 30235256 - 30234919
Alignment:
Q  17 attaaggcaccatcttagagaaagagtggttgctctttttatacgagaagaatcccaactacagacttagaacaagaacctaaattctttctcttgcaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30235256 attaaggcaccatcttagagaaagagtggttgctctttttatacgagaagaatcccaactacagacttagaacaagaacctaaattctttctcttgcaat 30235157  T
Q  117 attgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttatttta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30235156 attgagaaaaaacttaaatgatgttgattgatgtgatcaaattatttttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttatttta 30235057  T
Q  217 tgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcatttcagtgatataaaacactcattagcaaatt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30235056 tgttgtgattatagaagacttacacttaataaactaatccataaatatcaatattattttagttttcattttagtgatataaaacactcattagcaaatt 30234957  T
Q  317 tgacctaattgtattcattgttttaaatcaactaacag 354  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30234956 tgacctaattgtattcattgttttaaatcaactaacag 30234919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 128 - 353
Target Start/End: Complemental strand, 30137121 - 30136896
Alignment:
Q  128 acttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattttatgttgtgatta 227  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30137121 acttaaatgatgttgattgatgtgatcaaattatttttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattttatgttgtgatta 30137022  T
Q  228 tagaagacttacacttaataaactaatccataaatatgaatattattttagttttcatttcagtgatataaaacactcattagcaaatttgacctaattg 327  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30137021 tagaagacttacacttaataaactaatccataaatatcaatattattttagttttcatttcagtgatataaaacactcattagcaaatttgacctaattg 30136922  T
Q  328 tattcattgttttaaatcaactaaca 353  Q
    ||||||||||||||||||||||||||    
T  30136921 tattcattgttttaaatcaactaaca 30136896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 128 - 264
Target Start/End: Complemental strand, 30046077 - 30045941
Alignment:
Q  128 acttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattttatgttgtgatta 227  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30046077 acttaaatgatgttgattgatgtgatcaaattatttttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattttatgttgtgatta 30045978  T
Q  228 tagaagacttacacttaataaactaatccataaatat 264  Q
    |||||||||||||||||||||||||||||||||||||    
T  30045977 tagaagacttacacttaataaactaatccataaatat 30045941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 477 - 566
Target Start/End: Original strand, 30020147 - 30020236
Alignment:
Q  477 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 566  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30020147 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttaatattgtcttcat 30020236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 477 - 566
Target Start/End: Original strand, 30078565 - 30078654
Alignment:
Q  477 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 566  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30078565 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttaatattgtcttcat 30078654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 477 - 566
Target Start/End: Complemental strand, 30103496 - 30103407
Alignment:
Q  477 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 566  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30103496 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttaatattgtcttcat 30103407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 477 - 566
Target Start/End: Complemental strand, 30121725 - 30121636
Alignment:
Q  477 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 566  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30121725 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttaatattgtcttcat 30121636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 477 - 566
Target Start/End: Complemental strand, 30136730 - 30136641
Alignment:
Q  477 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 566  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30136730 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttaatattgtcttcat 30136641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 477 - 566
Target Start/End: Complemental strand, 30040548 - 30040459
Alignment:
Q  477 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 566  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  30040548 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttactattgtcttcat 30040459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 477 - 566
Target Start/End: Complemental strand, 30110026 - 30109937
Alignment:
Q  477 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 566  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  30110026 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttactattgtcttcat 30109937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 477 - 566
Target Start/End: Complemental strand, 30234686 - 30234597
Alignment:
Q  477 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 566  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  30234686 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttactattgtcttcat 30234597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 341 - 379
Target Start/End: Original strand, 30020000 - 30020038
Alignment:
Q  341 aaatcaactaacagctaacaaataagagatggcaataga 379  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30020000 aaatcaactaacagctaacaaataagagatggcaataga 30020038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 341 - 379
Target Start/End: Complemental strand, 30040695 - 30040657
Alignment:
Q  341 aaatcaactaacagctaacaaataagagatggcaataga 379  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30040695 aaatcaactaacagctaacaaataagagatggcaataga 30040657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 341 - 379
Target Start/End: Complemental strand, 30110173 - 30110135
Alignment:
Q  341 aaatcaactaacagctaacaaataagagatggcaataga 379  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30110173 aaatcaactaacagctaacaaataagagatggcaataga 30110135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 341 - 379
Target Start/End: Complemental strand, 30121871 - 30121833
Alignment:
Q  341 aaatcaactaacagctaacaaataagagatggcaataga 379  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30121871 aaatcaactaacagctaacaaataagagatggcaataga 30121833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 341 - 379
Target Start/End: Complemental strand, 30234833 - 30234795
Alignment:
Q  341 aaatcaactaacagctaacaaataagagatggcaataga 379  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30234833 aaatcaactaacagctaacaaataagagatggcaataga 30234795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 377
Target Start/End: Complemental strand, 30136868 - 30136832
Alignment:
Q  341 aaatcaactaacagctaacaaataagagatggcaata 377  Q
    |||||||||||||||||||||||||||||||||||||    
T  30136868 aaatcaactaacagctaacaaataagagatggcaata 30136832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 39324842 - 39324796
Alignment:
Q  131 taaatgatgttgattgatgtgatcaaattatctttgttttaattttt 177  Q
    |||||||| ||||||||||||||| |||||| |||||||||| ||||    
T  39324842 taaatgatattgattgatgtgatctaattatttttgttttaaatttt 39324796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 42352251 - 42352296
Alignment:
Q  132 aaatgatgttgattgatgtgatcaaattatctttgttttaattttt 177  Q
    ||||| |||||||||||||||| | ||||| |||||||||||||||    
T  42352251 aaatgttgttgattgatgtgattacattatttttgttttaattttt 42352296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 3771638 - 3771698
Alignment:
Q  131 taaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 191  Q
    ||||||||||||||||||||||| | ||||| ||||||||||||||| | |||||||||||    
T  3771638 taaatgatgttgattgatgtgattatattatttttgttttaatttttttcatttaatgtga 3771698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 41982520 - 41982605
Alignment:
Q  121 agaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatatt 206  Q
    ||||||||  ||||||||||||||||||| |||| |||||| |||||||||| |||| | |||| |||||||| || | |||||||    
T  41982520 agaaaaaaactaaatgatgttgattgatgggatctaattatttttgttttaaattttttcatttgatgtgagtgtgcccaaatatt 41982605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 4650341 - 4650387
Alignment:
Q  131 taaatgatgttgattgatgtgatcaaattatctttgttttaattttt 177  Q
    |||||||||||||||||||||||| |||||| |||||||||| ||||    
T  4650341 taaatgatgttgattgatgtgatctaattatttttgttttaaatttt 4650387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 38734692 - 38734733
Alignment:
Q  131 taaatgatgttgattgatgtgatcaaattatctttgttttaa 172  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  38734692 taaatgatgttgattgatgtgatctaattatttttgttttaa 38734733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 2858210 - 2858256
Alignment:
Q  131 taaatgatgttgattgatgtgatcaaattatctttgttttaattttt 177  Q
    |||||||||||||||||||||||| | |||| |||||||||| ||||    
T  2858210 taaatgatgttgattgatgtgatctatttatttttgttttaaatttt 2858256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 2846389 - 2846430
Alignment:
Q  131 taaatgatgttgattgatgtgatcaaattatctttgttttaa 172  Q
    ||||||||||||||||| |||||| |||||| ||||||||||    
T  2846389 taaatgatgttgattgaggtgatctaattatttttgttttaa 2846430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 29302550 - 29302595
Alignment:
Q  158 ttatctttgttttaatttttctaatttaatgtgagtatgtctaaat 203  Q
    |||| ||||||||||||||| |||||| ||||||||||| ||||||    
T  29302550 ttatttttgttttaatttttttaattttatgtgagtatgcctaaat 29302595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 3082748 - 3082689
Alignment:
Q  143 attgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaat 203  Q
    |||||| |||| ||||||| ||||||||||||||| | |||| |||||||| |||||||||    
T  3082748 attgatatgattaaattatttttgttttaattttt-tcattttatgtgagtgtgtctaaat 3082689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 33940956 - 33941006
Alignment:
Q  121 agaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgtttta 171  Q
    |||| ||| |||||||||||||||||||||||| ||||||| |||||||||    
T  33940956 agaataaaattaaatgatgttgattgatgtgattaaattatttttgtttta 33941006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 2308372 - 2308448
Alignment:
Q  137 atgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattt 214  Q
    ||||||||||||||||| | ||||| ||||||||||||||| | |||| |||||||| || | ||||||| |||||||    
T  2308372 atgttgattgatgtgattatattatttttgttttaattttt-tgatttgatgtgagtgtgcccaaatattttttattt 2308448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 27991927 - 27991973
Alignment:
Q  131 taaatgatgttgattgatgtgatcaaattatctttgttttaattttt 177  Q
    |||| |||||||||||||||||| | ||||| |||||||||||||||    
T  27991927 taaaagatgttgattgatgtgattatattatttttgttttaattttt 27991973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 206
Target Start/End: Original strand, 8245431 - 8245517
Alignment:
Q  120 gagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatatt 206  Q
    ||||| ||| ||||||||||||||||||||||||  |||||| ||||||| || ||||   |||| |||||||| | ||||||||||    
T  8245431 gagaataaaattaaatgatgttgattgatgtgatttaattatttttgtttaaaatttttccatttgatgtgagtgtttctaaatatt 8245517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 42107074 - 42106999
Alignment:
Q  131 taaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatatt 206  Q
    ||||||||||| |||||||||||  |||||| |||||||||| ||||   |||| |||||||| |||| |||||||    
T  42107074 taaatgatgttaattgatgtgatttaattatttttgttttaaatttttccatttgatgtgagtgtgtccaaatatt 42106999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 1035458 - 1035397
Alignment:
Q  131 taaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagt 193  Q
    |||||||| | |||| |||||||| |||||| ||||||||||||||| | |||||||||||||    
T  1035458 taaatgatatagattaatgtgatctaattatttttgttttaattttt-ttatttaatgtgagt 1035397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 38735907 - 38735973
Alignment:
Q  125 aaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 191  Q
    |||| ||||||||||||||||||||||||  |||||| |||| ||||| |||| | |||| ||||||    
T  38735907 aaaaattaaatgatgttgattgatgtgatttaattatttttgctttaaattttttcatttgatgtga 38735973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 31446665 - 31446718
Alignment:
Q  120 gagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaat 173  Q
    ||||| ||| ||||||||||||||||||| |||  ||||||| |||||||||||    
T  31446665 gagaataaaattaaatgatgttgattgatatgaataaattatttttgttttaat 31446718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 34121136 - 34121090
Alignment:
Q  131 taaatgatgttgattgatgtgatcaaattatctttgttttaattttt 177  Q
    ||||||||||||||||||||||| | ||||| |||||||||| ||||    
T  34121136 taaatgatgttgattgatgtgattatattatttttgttttaactttt 34121090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 38516122 - 38516179
Alignment:
Q  120 gagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaattttt 177  Q
    ||||| ||| ||||||||||||||||||||||||  |||||  |||||||| ||||||    
T  38516122 gagaataaaattaaatgatgttgattgatgtgatttaattaattttgtttttattttt 38516179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 25750914 - 25750837
Alignment:
Q  130 ttaaatgatgttgattgatgtgatcaaatta-tctttgtttt-aatttttctaatttaatgtgagtatgtctaaatatt 206  Q
    ||||||||||||||||||||| ||  ||||| | |||||||| ||||||||| |||| |||||||| ||||||||||||    
T  25750914 ttaaatgatgttgattgatgtaatttaattattttttgttttaaatttttct-atttgatgtgagtgtgtctaaatatt 25750837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 49222430 - 49222523
Alignment:
Q  141 tgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattttatgttgtgattatagaaga 234  Q
    ||||||||||||| ||| ||| ||| ||||||| ||| | |||| |||||||| | | |||| ||| ||||||| | |||||||||||| ||||    
T  49222430 tgattgatgtgattaaactatttttattttaatatttttcatttgatgtgagtgtatttaaacattttttatttaaagttgtgattataaaaga 49222523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University