View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18543_low_10 (Length: 284)
Name: NF18543_low_10
Description: NF18543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18543_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 268
Target Start/End: Original strand, 48776492 - 48776755
Alignment:
| Q |
8 |
gagaggaaaaagtaaatgctacaattttatctatgtggctaactattacgacatattgtacttgnnnnnnnnnnn----catgtgtacaaaaacaaattt |
103 |
Q |
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| T |
48776492 |
gagaggaaaaagtaaatgctacaattttatctatgtggctaactattacgacatattgtaattgatttttttttcttttcatgtgtacaaaaacaaattt |
48776591 |
T |
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| Q |
104 |
aagacatacgacaaagtatgagggattaagatctattgtagttgctgcatcacctagtaaccaatctcaatcattaatttgaagtaggaccatgaatatc |
203 |
Q |
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| T |
48776592 |
aagacatacgacaaagtatgagggattaagatctattgtagttgctgcatcacctagtaaccaatctcaatcattaatttgaagtaggaccatgaatatc |
48776691 |
T |
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| Q |
204 |
acacaagtagtttcacacagttaaccgatcatggccattttattcaaatcgtattggcaagaagc |
268 |
Q |
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| T |
48776692 |
acacaagtagtttcacacagttaaccgatcatggcca-tttattcaaatcgtattggcaagaagc |
48776755 |
T |
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