View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18543_low_16 (Length: 243)
Name: NF18543_low_16
Description: NF18543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18543_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 43082602 - 43082760
Alignment:
| Q |
13 |
agcacagacacaatgtagtaggtcttagccatgaaacactaactcagttccggtcatggttgttgtgactaattttatgagcatcttgtgcattctgtca |
112 |
Q |
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| T |
43082602 |
agcacagacacaatgtagtaggtcttagccatgaaacactaactcagttccggtcatggttgttgtgactaattttatgagcatcttgtgcattctgtca |
43082701 |
T |
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| Q |
113 |
atccgttaacaaatggctatacctcgatctgtcgcaaacagacaggcagcaactctaat |
171 |
Q |
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| T |
43082702 |
atccgttaacaaaaggctatacctcgatctgtcgcaaacagacaggcagcaactctaat |
43082760 |
T |
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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 43082759 - 43082793
Alignment:
| Q |
192 |
atgttcttggccatcgaatgtgatgagttcaaaac |
226 |
Q |
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| T |
43082759 |
atgttcttggccatcgaatgtgatgagttcaaaac |
43082793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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