View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18543_low_18 (Length: 238)
Name: NF18543_low_18
Description: NF18543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18543_low_18 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 48776429 - 48776503
Alignment:
| Q |
165 |
gtaggacgcgcgagaaattaatagagtt-aaaaaataatagtctaaaaattgttgagggagtcgagaggaaaaag |
238 |
Q |
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| T |
48776429 |
gtaggatgcgcgagaaattaatagagtggaaaaaataatagtttaaaaattgttgagggagtcgagaggaaaaag |
48776503 |
T |
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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 48776267 - 48776301
Alignment:
| Q |
4 |
attctaactgagttcggattatttaatcctaactg |
38 |
Q |
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| T |
48776267 |
attctaactgagttcggattatttaatcataactg |
48776301 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 81
Target Start/End: Complemental strand, 41253269 - 41253241
Alignment:
| Q |
53 |
cagattataaaattcgaattggtgaaaaa |
81 |
Q |
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| T |
41253269 |
cagattataaaattcgaattggtgaaaaa |
41253241 |
T |
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