View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18543_low_2 (Length: 551)
Name: NF18543_low_2
Description: NF18543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18543_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 75 - 465
Target Start/End: Complemental strand, 7899534 - 7899156
Alignment:
| Q |
75 |
attttggtatgtataataatatatat-gaatattggagacaagaaacctggtttatgtgaagaataattgagaaaaattgaaagtattgagtatatagaa |
173 |
Q |
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| T |
7899534 |
attttgataagtataataatatgaatagaatattggagacaagaaacctggtttatatgaagaataattgagaaaaatggaaagtattgagtctatagaa |
7899435 |
T |
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| Q |
174 |
tactatatattataccagttgttcagcgagttgaatagcagcatgttgatagatgggatttttgccagggctagctggttccacagaagacacaaatacg |
273 |
Q |
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| T |
7899434 |
tactatatattataccagttgttcagcaagttgaatagcagcatgttggtagatgggatttttgccagg----gctggtgccacagaagacacaaatacg |
7899339 |
T |
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| Q |
274 |
tttgaacctactactaaatttgatgggtttttgttgcttacgaatttccatcattgggaaaagtatttttatgattttgttgcttgaattggttatgtta |
373 |
Q |
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| T |
7899338 |
tttgaacctactactaaatttgatgggttgttgttgcttatgaatttccataatagggaaaagtatttttatgattttgttgcttgaattggttatgtta |
7899239 |
T |
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| Q |
374 |
tgatatgtattgtgaatactgataaatataatgaagggtgagagagacatgagaatagaataggcaaacgtgtttcttgtgctaaccaaaag |
465 |
Q |
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| T |
7899238 |
tgata-----tgtgaat----ataaatataatgaagggtgagagagacagaagaatagaataggcaaacgtgtttcttgtgctaaccaaaag |
7899156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 7884022 - 7883816
Alignment:
| Q |
11 |
cagagagttaaagactaaaaaaccatctatagaaatataataaggaccaccaaagtacactctaattttggtatgtataataatatatatgaatattgga |
110 |
Q |
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| T |
7884022 |
cagagagttaaagactaaaaaaccatctatagaaatataacaaggaccaccaaagtacactctaattctggtatgtataataatat----gaatattgga |
7883927 |
T |
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| Q |
111 |
gacaagaaacctggtttatgtgaagaataattgagaaaaattgaaagtattgagtatatagaatactatatattataccagttgttcagcgagttgaata |
210 |
Q |
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| T |
7883926 |
gacaagaaacctggtttatgtgaagaataattgagaaaaattgaaagtattgagtatatagaatactatatattataccagttgttcagcgagttgaata |
7883827 |
T |
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| Q |
211 |
gcagcatgttg |
221 |
Q |
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| T |
7883826 |
gcagcatgttg |
7883816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 482 - 534
Target Start/End: Complemental strand, 7898772 - 7898720
Alignment:
| Q |
482 |
tgtttgttggaaaacaaatggccaaaagtgagtgaagggaatctatgagaatt |
534 |
Q |
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| T |
7898772 |
tgtttgttggaaaacaaatggccaaaagtgagtgaagggaatctataagaatt |
7898720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 330
Target Start/End: Complemental strand, 7883787 - 7883740
Alignment:
| Q |
282 |
tactactaaatttgatgggtttttgttgcttacgaatttccatcattgg |
330 |
Q |
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| T |
7883787 |
tactactaaatttgatgggtttt-gttgcttatgaatttccatcattgg |
7883740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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