View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18543_low_8 (Length: 349)
Name: NF18543_low_8
Description: NF18543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18543_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 49025 - 48709
Alignment:
| Q |
18 |
gtgtattaagcatttccaaaagaggatgggagtgagttactgctgtcttcattttcttgttcatccaattcatttgtgattccactgctagctggtgaga |
117 |
Q |
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| T |
49025 |
gtgtattaagcatttccaaaagaggatgggagtgacttactgctgtcttcattttcttgttcatccaattcatttgtgattccactgctagctggtgaga |
48926 |
T |
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| Q |
118 |
ttgtgattgaggtggaggatgcatccgtattattgttcttcttctctgccaagaaatcatagaaaaccaccacttttgaacttgaatttgagcttgaagc |
217 |
Q |
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| T |
48925 |
ttgtgattgaggtggaggatgcatccgtattattgttcttcttctctgccaagaaatcatagaaaaccaccacttttgaacttgaatttgagcttgaagc |
48826 |
T |
|
| Q |
218 |
tgagttcttcttcacctcatcaccaaagttgctgccactgcttggcttcaatcctttgactactctctcctctccatttttagcaccacttctcctcttg |
317 |
Q |
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| T |
48825 |
tgagttcttcttcacctcatcaccaaagttgctgccactgcttggcttcaatcctttgactactctctcctctccatttttagcaccacttctcctcttg |
48726 |
T |
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| Q |
318 |
agaaatatgcgacacag |
334 |
Q |
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| T |
48725 |
agaaatatgcgacacag |
48709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 25851708 - 25851784
Alignment:
| Q |
22 |
attaagcatttccaaaagaggatgggagtgagttactgctgtcttcattttcttgttcatccaattcatttgtgatt |
98 |
Q |
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| T |
25851708 |
attaagcatttccaaaagaggaagggagtgagttactgatgtcttcattttcatgttcatcccattcatttgtgatt |
25851784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 25851651 - 25851581
Alignment:
| Q |
28 |
catttccaaaagaggatgggagtgagttactgctgtcttcattttcttgttcatccaattcatttgtgatt |
98 |
Q |
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| T |
25851651 |
catttccaaaagaggatgggagtgagttactgctgtcttcgttttcatgttcatccaattcatctgtgatt |
25851581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 25851777 - 25851865
Alignment:
| Q |
118 |
ttgtgattgaggtggaggatgcatccgtattattgttcttcttctctgccaagaaatcatagaaaaccaccacttttgaacttgaatttgag |
209 |
Q |
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| T |
25851777 |
ttgtgatttaggaggaggatgcatcagtatt---gttcttcttctctgcgaagaaatcatagaaaacaaccacttttgaacttgaagttgag |
25851865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 25851587 - 25851506
Alignment:
| Q |
119 |
tgtgattgaggtggaggatgcatccgtattattgttcttcttctctgccaagaaatcatagaaaaccaccacttttgaacttgaa |
203 |
Q |
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| T |
25851587 |
tgtgattgaggaggatgatgcatc---aatattgttcttcttctatgtgaagaaatcatagaaaactaccacttttgaacttgaa |
25851506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 148 - 326
Target Start/End: Original strand, 25515104 - 25515267
Alignment:
| Q |
148 |
tattgttcttcttctctgccaagaaatcatagaaaaccaccacttttgaacttgaatttgagcttgaagctgagttcttcttcacctcatcaccaaagtt |
247 |
Q |
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|||||||||||||||| |||| ||||||||||||||| |||||||||||||||| ||||||||||||| ||| | | ||||||||||| |
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| T |
25515104 |
tattgttcttcttctcagccatgaaatcatagaaaacaaccacttttgaacttg------------aagctgagttctttttcttcacctcaccaaagtt |
25515191 |
T |
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| Q |
248 |
gctgccactgcttggcttcaatcctttgactactctctcctctccatttttagcaccacttctcctcttgagaaatatg |
326 |
Q |
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|||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||| ||||||||| ||||||||| |
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| T |
25515192 |
gctgccactgcttggcttcacacctttcacta---tctcttctccatttttagcaccacctctcctctttagaaatatg |
25515267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 148 - 326
Target Start/End: Complemental strand, 25520270 - 25520107
Alignment:
| Q |
148 |
tattgttcttcttctctgccaagaaatcatagaaaaccaccacttttgaacttgaatttgagcttgaagctgagttcttcttcacctcatcaccaaagtt |
247 |
Q |
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|||||||||||||||| |||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| | | ||||||||||| |
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| T |
25520270 |
tattgttcttcttctcagccatgaaatcatagaaaacaaccacttttgaacttgaa------------gctgagttcttcttcttcacctcaccaaagtt |
25520183 |
T |
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| Q |
248 |
gctgccactgcttggcttcaatcctttgactactctctcctctccatttttagcaccacttctcctcttgagaaatatg |
326 |
Q |
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| T |
25520182 |
gctgccactgcatggcttcactccttt---cactgtctcttctccatttttagcaccacctctcctctttagaaatatg |
25520107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 42802460 - 42802375
Alignment:
| Q |
118 |
ttgtgattgaggtggaggatgcatccgtattattgttcttcttctctgccaagaaatcatagaaaaccaccacttttgaacttgaa |
203 |
Q |
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||||||| |||| |||||||||||| ||||| || |||||||||||||| ||||||||||||||||| ||||||||| |||||||| |
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| T |
42802460 |
ttgtgatcgaggaggaggatgcatcagtattgttcttcttcttctctgcgaagaaatcatagaaaacaaccacttttaaacttgaa |
42802375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 42802508 - 42802459
Alignment:
| Q |
22 |
attaagcatttccaaaagaggatgggagtgagttactgctgtcttcattt |
71 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42802508 |
attaagcatttccaaaagaggatgggagtgagttactgctgtcttcattt |
42802459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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