View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18544_high_9 (Length: 335)
Name: NF18544_high_9
Description: NF18544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18544_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 107 - 317
Target Start/End: Original strand, 1242818 - 1243028
Alignment:
| Q |
107 |
catatataaacatacattagttaatttcctactaataataattttcagacatatataattagcttaccggactgcttgcaactagagcaccatcaactaa |
206 |
Q |
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| T |
1242818 |
catatttaaccatacattagttaatttcctactaataataattttcagacatatataattagcttaccggactgcttgcaactagagcaccatcaactaa |
1242917 |
T |
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| Q |
207 |
attgaattcaatatcaccattcttaaagccataaggaggtagtagagttggtgcagctgaagtcccaatggctatatcagacaattttgcatctaggtct |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1242918 |
attgaattcaatatcaccattcttaaagccataaggaggtagtaaggttggtgcagctgaagtcccaatggctatatccgacaattttgcatctaggtct |
1243017 |
T |
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| Q |
307 |
ggaactttctc |
317 |
Q |
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||||||||||| |
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| T |
1243018 |
ggaactttctc |
1243028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 107 - 317
Target Start/End: Original strand, 1253517 - 1253727
Alignment:
| Q |
107 |
catatataaacatacattagttaatttcctactaataataattttcagacatatataattagcttaccggactgcttgcaactagagcaccatcaactaa |
206 |
Q |
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| T |
1253517 |
catatttaaccatacattagttaatttcctactaataataattttcagacatatataattagcttaccggactgcttgcaactagagcaccatcaactaa |
1253616 |
T |
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| Q |
207 |
attgaattcaatatcaccattcttaaagccataaggaggtagtagagttggtgcagctgaagtcccaatggctatatcagacaattttgcatctaggtct |
306 |
Q |
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| T |
1253617 |
attgaattcaatatcaccattcttaaagccataaggaggtagtaaggttggtgcagctgaagtcccaatggctatatccgacaattttgcatctaggtct |
1253716 |
T |
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| Q |
307 |
ggaactttctc |
317 |
Q |
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||||||||||| |
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| T |
1253717 |
ggaactttctc |
1253727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 161 - 298
Target Start/End: Original strand, 1196666 - 1196803
Alignment:
| Q |
161 |
ataattagcttaccggactgcttgcaactagagcaccatcaactaaattgaattcaatatcaccattcttaaagccataaggaggtagtagagttggtgc |
260 |
Q |
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||||||||||||| ||||| |||||| | ||||||||||||| ||||||||||||| ||||||||||| ||||| ||| | ||||| ||||||||||| |
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| T |
1196666 |
ataattagcttacaggactacttgcagccagagcaccatcaattaaattgaattcattatcaccattcgtaaagttataggctggtagaagagttggtgc |
1196765 |
T |
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| Q |
261 |
agctgaagtcccaatggctatatcagacaattttgcat |
298 |
Q |
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| T |
1196766 |
agctgaagtcccaatggctatatccgacagttttgcat |
1196803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 1242575 - 1242649
Alignment:
| Q |
17 |
atgaaatcagaattcttttcctctaatagttttatcacttcactcactgcaagcaatgcctgcatatacaatttt |
91 |
Q |
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| T |
1242575 |
atgaaatcagaattcttttcctctaatagttttatcacttcactcactgcaagcaatgcctgcatatacaatttt |
1242649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 1253274 - 1253348
Alignment:
| Q |
17 |
atgaaatcagaattcttttcctctaatagttttatcacttcactcactgcaagcaatgcctgcatatacaatttt |
91 |
Q |
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| T |
1253274 |
atgaaatcagaattcttttcctctaatagttttatcacttcactcactgcaagcaatgcctgcatatacaatttt |
1253348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 1277379 - 1277438
Alignment:
| Q |
244 |
ggtagtagagttggtgcagctgaagtcccaatggctatatcagacaattttgcatctagg |
303 |
Q |
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| T |
1277379 |
ggtagaagagttggtgcagctgaagtcccaatggctatatccgacaattttgcatctagg |
1277438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 1242678 - 1242710
Alignment:
| Q |
87 |
attttgaatatttgctttatcatatataaacat |
119 |
Q |
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| T |
1242678 |
attttgaatatttgctttatcatatataaacat |
1242710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 1253377 - 1253409
Alignment:
| Q |
87 |
attttgaatatttgctttatcatatataaacat |
119 |
Q |
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| T |
1253377 |
attttgaatatttgctttatcatatataaacat |
1253409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 1300290 - 1300242
Alignment:
| Q |
252 |
agttggtgcagctgaagtcccaatggctatatcagacaattttgcatct |
300 |
Q |
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| T |
1300290 |
agttggtgcagctgaagttccaatgcatatatctgataattttgcatct |
1300242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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