View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18544_low_1 (Length: 996)
Name: NF18544_low_1
Description: NF18544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18544_low_1 |
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| [»] scaffold0321 (3 HSPs) |
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Alignment Details
Target: scaffold0321 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 529 - 987
Target Start/End: Original strand, 16005 - 16463
Alignment:
| Q |
529 |
cacttatttgaaggtacttttactgtggctgtgtttggctacactggtggtaggagattatgctccatcaccacaaaatccattcgttaacttcacacac |
628 |
Q |
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| T |
16005 |
cactttttttaaggtacttttactgtggctgtgtttggctacactggtggttggagattatgctccatcaccacaaaatccattcgttaacttcacacac |
16104 |
T |
|
| Q |
629 |
attccttcacctccacctccacatcagcaggctcctatgaagtcacctcttcctgcacctccaccgatgaagtcacctcttcctccacctccaccggcct |
728 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16105 |
attccttcacctccacctccacatcagcaggctcctatgaagtcacctcttcctgcacctccaccgatgaagtcacctcttcctccacctccacaggcct |
16204 |
T |
|
| Q |
729 |
ctccaccggcctcaagttcattcggaggtctgggttgggctgttttggtgattggtgtcattgcagcgttctttgtgggttactgctgcagaatccgcca |
828 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16205 |
ctccaccggcctcaagttcattcggaggtctgggttgggctgttttggtgattggtgtcattgcagcgttctttgtgggttactgctgcagaatccgcca |
16304 |
T |
|
| Q |
829 |
tagtggagtcgaagcagctgaagaagagtctattgatgaaaatgatttgacataggtggatgaagtatgattataccataggcatatgcgtttttcatac |
928 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16305 |
tagtggagtcgaagcagctgaagaagagtctattgatgaaaatgatttgacataggtggatgaagtatgattataccataggcatatgcatttttcatac |
16404 |
T |
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| Q |
929 |
acatgtatttttaactagacattatcatgtgatcttctacgtcctatatctgtgctgct |
987 |
Q |
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| T |
16405 |
acatgtatttttaactagacattatcatgtgatctttcacgtcctatatttgtactgct |
16463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 15383 - 15669
Alignment:
| Q |
1 |
tactatatctgatttgctcatatttttgtgaaggtggctggggaaactaaacatctacctcgtcttagggatctttgtaataacgagattgttgtcagat |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
15383 |
tactatatctgatttgcccatatttttgtgaaggtggctgggagaactaaacatctacctcatcttagggatctttgtaataacgagattgttgtcagat |
15482 |
T |
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| Q |
101 |
cagcgaagcatgttatcaaggtgcatgataacaactatcttaaagatttcattttcctcttgttttcctctatcattagctaatttgaaatctgaaataa |
200 |
Q |
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| T |
15483 |
cagcgaaacatgttatcaaggtgcatgataacaactatcttaaagatttcattttcctctggttttcctctatcattagctaatttgaaatctgaaataa |
15582 |
T |
|
| Q |
201 |
taacgagaatcgtcaaatgcatagtggtcttctataataggatcggggaattctgtgtcttcattttcgtggaaatatgtttcatgat |
288 |
Q |
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| T |
15583 |
taacgagaatcgtcaaatgcatagtggtcttctataataggatcgggg-attctgtgtcttcattttcgtggaaatatgtttcatgat |
15669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321; HSP #3
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 285 - 507
Target Start/End: Original strand, 15705 - 15927
Alignment:
| Q |
285 |
tgatttgtataactttgtgagtgtttgagtgtttaatctgccaatccttgtttgaatcctcttttgtcaatcactggatggatgatagaggtgaatcctc |
384 |
Q |
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| T |
15705 |
tgatttgtataactttgtgagtgtttgagtgtttaatctgccaatccttgtttgaatcctcttttgtcaatcactggatggatgatagaggtgaatcctc |
15804 |
T |
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| Q |
385 |
ttttgttggtaaacgatatagcaatgcttaacattgtttctattattctatatatagcagttctctttattattttttcgtcaaaaacaaataagaagca |
484 |
Q |
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| T |
15805 |
ttttgtcggtaaacgatatagcaatgcttaacattgtttctattattctatatatagcagttctctttattattttttcgtcaaaaacaaataagaagca |
15904 |
T |
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| Q |
485 |
aggtagataacgtttgtatataa |
507 |
Q |
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| T |
15905 |
aggtagataaagtttgtatataa |
15927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 2e-52; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 8666320 - 8666501
Alignment:
| Q |
9 |
ctgatttgctcatatttttgtgaaggtggctggggaaactaaacatctacctcgtcttagggatctttgtaataacgagattgttgtcagatcagcgaag |
108 |
Q |
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||||||||| ||| ||||||||||||||||||||| ||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||| |
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| T |
8666320 |
ctgatttgcccatgtttttgtgaaggtggctgggggaactaaacatctacctcatctgtgggatctatgtaataatgagattgttgtcagatcagcgaaa |
8666419 |
T |
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| Q |
109 |
catgttatcaaggtgcatgataacaactatcttaaagatttcattttcctcttgttttcctctatcattagctaatttgaaatctga |
195 |
Q |
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| T |
8666420 |
catgttatcaaggtg----ataa-aactgtcttaagcatttcattctcctctttttttcctctatcattagctaatttgaaatctga |
8666501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 196 - 288
Target Start/End: Original strand, 8666548 - 8666638
Alignment:
| Q |
196 |
aataataacgagaatcgtcaaatgcatagtggtcttctataataggatcggggaattctgtgtcttcattttcgtggaaatatgtttcatgat |
288 |
Q |
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| T |
8666548 |
aataatgacgggaatcatcaaatgcatagtagtcttctataatagaat--gggaattctgtgtcttcatttttgtggaagtatattttatgat |
8666638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 8666673 - 8666727
Alignment:
| Q |
285 |
tgatttgtataactttgtgagtgtttgagtgtttaatctgccaatccttgtttgaa |
340 |
Q |
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||||||||||||||| | |||||||||||||||||||||||| | |||||||||| |
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| T |
8666673 |
tgatttgtataactt-gcaagtgtttgagtgtttaatctgccagttcttgtttgaa |
8666727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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