View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18544_low_13 (Length: 316)
Name: NF18544_low_13
Description: NF18544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18544_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 25346135 - 25346435
Alignment:
| Q |
18 |
atcaagataaaaagaaaatattttatagttataactaagtcctaatcttagaaatggaatgttttagtannnnnnn-caacctaa---ccaaaagagcca |
113 |
Q |
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| T |
25346135 |
atcaagataaaaagaaaatattttatagttataactaagtcctaatcttagaaatggaatgttttagtattttttttcaacctaataaccaaaagagcca |
25346234 |
T |
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| Q |
114 |
aattgaattctagcagaactgaaatatctctatatcaaattcaaatagtcaaaaccagaatatatctaactgaaacctatctaaatgatttatcacctaa |
213 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25346235 |
aattgaattctaccagaactgaaatctctctatatcaaattcaaatagtcaaaaccagaatatatctaactgaaacctatctaaatgatttatcacctaa |
25346334 |
T |
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| Q |
214 |
catttcataaaaatgaataaaacaaatctctagtttttcccttttgctgctaaaaacataagaaacaatacaaggtaaaaacagaacaaaagttgttcat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25346335 |
catttcataaaaatgaataaaacaaatctctagtttttccctttttctgctaaaaacataagaaacaatacaaggtaaaaacagaacaaaagttgttcat |
25346434 |
T |
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| Q |
314 |
c |
314 |
Q |
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| T |
25346435 |
c |
25346435 |
T |
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