View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18544_low_14 (Length: 279)
Name: NF18544_low_14
Description: NF18544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18544_low_14 |
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| [»] scaffold0252 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 7773911 - 7774154
Alignment:
| Q |
17 |
tagtgcaatttgatgctttataaacctatgccattaattcaagagtagaatttaggaacaacttgcattgtgaaccaaaagtgaggaactaaagctcaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7773911 |
tagtgcaatttgatgctttataaacctatgccattaattcaagagtagaatttaggaacaacttgcattgtgaaccaaaagtgaggaactaaagctcaat |
7774010 |
T |
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| Q |
117 |
ttggaagaagccaaatcaaacaccaaaagattatcctccaattgatgtccaccaatgacaattgaagcttttgtaaatgacattcttggctctgtccctc |
216 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7774011 |
ttggaagaagctaaatcaaacaccaaaagattgtcctccaattgatgtccaccaataacaattgaagcttttgtaaatgacattcttggctctgtccctc |
7774110 |
T |
|
| Q |
217 |
catcaacaattccaagacatgctacatttttcttcacattaacc |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7774111 |
catcaacaattccaagacatgctacatttttcttcacattaacc |
7774154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 29 - 260
Target Start/End: Original strand, 7766596 - 7766827
Alignment:
| Q |
29 |
atgctttataaacctatgccattaattcaagagtagaatttaggaacaacttgcattgtgaaccaaaagtgaggaactaaagctcaatttggaagaagcc |
128 |
Q |
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|||||| |||||||||||||||| || |||||||| |||||||||||||||||| | || ||||||||||||||||| ||||||||||||||||||||| |
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| T |
7766596 |
atgcttaataaacctatgccattgctttaagagtaggatttaggaacaacttgcactatggaccaaaagtgaggaactgaagctcaatttggaagaagcc |
7766695 |
T |
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| Q |
129 |
aaatcaaacaccaaaagattatcctccaattgatgtccaccaatgacaattgaagcttttgtaaatgacattcttggctctgtccctccatcaacaattc |
228 |
Q |
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| T |
7766696 |
aaatcaaacaccaaaagattgtcttccaattgatgtccaccaataacaattgaagttttggtaaatgacattcttggctctgtccctccatcaacaaatc |
7766795 |
T |
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| Q |
229 |
caagacatgctacatttttcttcacattaacc |
260 |
Q |
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|||||||||||||||||||||| ||||||||| |
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| T |
7766796 |
caagacatgctacatttttctttacattaacc |
7766827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 7704445 - 7704378
Alignment:
| Q |
114 |
aatttggaagaagccaaatcaaacaccaaaagattatcctccaattgatgtccaccaatgacaattga |
181 |
Q |
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|||||||||||| | ||||||||| |||| ||||| ||||||||||| || |||||||| |||||||| |
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| T |
7704445 |
aatttggaagaaactaaatcaaactccaatagattctcctccaattggtgcccaccaataacaattga |
7704378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 7745825 - 7745888
Alignment:
| Q |
114 |
aatttggaagaagccaaatcaaacaccaaaagattatcctccaattgatgtccaccaatgacaa |
177 |
Q |
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||||| |||||| ||||||||||| |||| ||||| ||||||||||| ||||||||||| |||| |
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| T |
7745825 |
aatttagaagaaaccaaatcaaactccaatagattgtcctccaattggtgtccaccaatcacaa |
7745888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 7711767 - 7711704
Alignment:
| Q |
114 |
aatttggaagaagccaaatcaaacaccaaaagattatcctccaattgatgtccaccaatgacaa |
177 |
Q |
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||||| |||||| |||||||||| |||| ||||| ||||||||||| ||||||||||| |||| |
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| T |
7711767 |
aatttagaagaaatcaaatcaaactccaatagattgtcctccaattggtgtccaccaatcacaa |
7711704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 7734007 - 7733959
Alignment:
| Q |
199 |
ttcttggctctgtccctccatcaacaattccaagacatgctacattttt |
247 |
Q |
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||||||||||| | || ||||| |||| ||||||||||||||||||||| |
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| T |
7734007 |
ttcttggctctttaccaccatccacaaatccaagacatgctacattttt |
7733959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 12144 - 12015
Alignment:
| Q |
29 |
atgctttataaacctatgccattaattcaagagtagaatttaggaacaacttgcattgtgaaccaaaagtgaggaactaaagctcaatttggaagaagcc |
128 |
Q |
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|||||| || ||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| |
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| T |
12144 |
atgcttaatgaacatatgccattaattcaagagtaggatttaggaacaacttgcattgtggaccaaaagtgaggaactaaagctcaatttagaggaagct |
12045 |
T |
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| Q |
129 |
aaatcaaacaccaaaagattatcctccaat |
158 |
Q |
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| T |
12044 |
agatcaaacaccaaaagattgtccaccaat |
12015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 12025 - 11927
Alignment:
| Q |
162 |
tgtccaccaatgacaattgaagcttttgtaaatgacattcttggctctgtccctccatcaacaattccaagacatgctacatttttcttcacattaacc |
260 |
Q |
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||||||||||| |||| ||||||||||| | | ||| |||||| |||||||||||| |||| | | | |||||||||||||||||| ||||||||| |
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| T |
12025 |
tgtccaccaataacaactgaagcttttgcagacgaccatcttggtgatgtccctccatcgacaaatgccaaacatgctacatttttctttacattaacc |
11927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 48521583 - 48521695
Alignment:
| Q |
71 |
ggaacaacttgcattgtgaaccaaaagtgaggaactaaagctcaatttggaagaagccaaatcaaacaccaaaagattatcctccaattgatgtccacca |
170 |
Q |
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|||||||||||| |||| | ||||||||||| ||||||| | ||| || ||| | | ||||||| ||| ||||||||||||||||||||| |||||| |
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| T |
48521583 |
ggaacaacttgctttgttgagtaaaagtgaggagctaaagccaagttttgaggaaacaagatcaaactccacaagattatcctccaattgatgcccacca |
48521682 |
T |
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| Q |
171 |
atgacaattgaag |
183 |
Q |
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|| | |||||||| |
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| T |
48521683 |
ataataattgaag |
48521695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 32147460 - 32147544
Alignment:
| Q |
100 |
aggaactaaagctcaatttggaagaagccaaatcaaacaccaaaagattatcctccaattgatgtccaccaatgacaattgaagc |
184 |
Q |
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|||| ||||| | |||||| |||| |||||||||||| ||||||||||| |||||| |||| || ||||| ||||||||||| |
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| T |
32147460 |
aggagctaaatcccaatttagaagcagccaaatcaaattgcaaaagattattctccaactgataccctccaatcacaattgaagc |
32147544 |
T |
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