View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18544_low_15 (Length: 229)
Name: NF18544_low_15
Description: NF18544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18544_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 42264873 - 42264819
Alignment:
| Q |
16 |
atgaacaaaccaaagcagagacaagcaaaagtcacgtttaacagggctacacaag |
70 |
Q |
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| T |
42264873 |
atgaacaaaccaaagcagagacaagcaaaagtcacgtttaacagggctacacaag |
42264819 |
T |
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Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 42264730 - 42264677
Alignment:
| Q |
160 |
cacagactctctagcacacctgagttgcaaagcaaacaaagagaatgaagaaac |
213 |
Q |
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| T |
42264730 |
cacaaactctctagcacacctgagttgcaaagcaaacaaagagaatgaagaaac |
42264677 |
T |
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