View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18544_low_2 (Length: 681)
Name: NF18544_low_2
Description: NF18544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18544_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 209 - 670
Target Start/End: Complemental strand, 48649136 - 48648686
Alignment:
| Q |
209 |
tcatcaaaatcaaccagaaagtaagtttgtaaatggtctgtacctgtacgtaaactaagtttggttctatttgcaaccttgtctatgtgacttatttaca |
308 |
Q |
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| T |
48649136 |
tcatcaaaatcaaccagaaagtaagtttgtaaatggtctgtac------gtaaactaagtttggttctatttgcaaccttgtctatgtgacttatttaca |
48649043 |
T |
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| Q |
309 |
cactaatattcttgaaatatactctagaaaaagcttaaaagaggccgttgtatttagtcaaaaagaagatgccattggccattacaaatcacccagcagt |
408 |
Q |
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| T |
48649042 |
cacta---ttcttgaaatatactctagaaaaagcttaaaagagtccgttgtatttagtcaaaaagaagatgccattggccattacaaatcacccagcagt |
48648946 |
T |
|
| Q |
409 |
taattggcccactaagaggaaactttatgatgtttgatatgcagatgcaccgtattatatcgatcggtacggaagaataaaataaaaaagggacagagag |
508 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48648945 |
taattggcccactaagaggaaactttatgatgtttg--atgcagatgcaccgtattatatcgatcggtacggaagaataaaataaaaaagggacagagag |
48648848 |
T |
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| Q |
509 |
catgcatgcccgaactcaactactaataagtcnnnnnnnnnnnnnnnnnttaatccaacactcgaactacaagtttgattctcattctcaagagaaaaca |
608 |
Q |
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| T |
48648847 |
catgcatgcccgaactgaactactaataagtcaaaaagagaaagaaaaattaatccaacactcgaactacaagtttgattctcattctcaagagaaaaca |
48648748 |
T |
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| Q |
609 |
aattaagaacccatccattcatccactcgtgctgcaagattcatattcaatttcttctcact |
670 |
Q |
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| T |
48648747 |
aattaagaacccatccattcatccactcgtgctgcaagattcatattcaaattcttctcact |
48648686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 48649423 - 48649216
Alignment:
| Q |
13 |
catcaaatctctatgtaacttctgtctgtcattctggcacgggggaattgcaa-----ctaacaacaaactctgactactatatatatagttgaattata |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
48649423 |
catcaaatctctatgtaacttctgtctgtcattctggcactggggaattgcaatgcaactaacaacaaactctgactactatatatatagttgaattata |
48649324 |
T |
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| Q |
108 |
caacaacatctataggtattcattgagactaagatattgtttaccttaaacaaataagagcattaat--nnnnnnnccagagcatcataatttagttcaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
48649323 |
caacaacatctataggtattcattgagactaagatcttgtttaccttaaacaaataagagcattaataaaaaaaaaccagagcatcataa-ttagttcaa |
48649225 |
T |
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| Q |
206 |
acatcatca |
214 |
Q |
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||||||||| |
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| T |
48649224 |
acatcatca |
48649216 |
T |
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