View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18544_low_5 (Length: 533)
Name: NF18544_low_5
Description: NF18544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18544_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 495; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 51804776 - 51805290
Alignment:
| Q |
1 |
tcagggatgtttccggttaagagattactggaaagatctagaaggttgagtgattccaaggaagagaatgaatcaggaatagaagagttcagcttgtttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51804776 |
tcagggatgtttccggttaagagattactggaaagatctagaaggttgagtgattccaaggaagagaatgaatcaggaatagaagagttcagcttgtttg |
51804875 |
T |
|
| Q |
101 |
cttgtagcataagcaagttaagctttctaaggttaccaatctcagaaggaattggaccagaaagaaagttataactgaaatcaattttgacaaggttata |
200 |
Q |
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| T |
51804876 |
cttgtagcataagcaagttaagctttctaaggttaccaatctcagaaggaattggaccagaaagaaagttataactgaaatcaattttgacaaggttata |
51804975 |
T |
|
| Q |
201 |
agctctagagattgttggtgttaattgtcctgaaatcttgttcctctgaaggaaaagctcagacaagtttctagaatttccgttgatctcgggaatcgga |
300 |
Q |
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| T |
51804976 |
agcactagagattgttggtgttatttgtcctgaaatcttgttcctctgaaggaaaagctcagacaagtttctagaatttccgttgatctcgggaatcgga |
51805075 |
T |
|
| Q |
301 |
ccagtcagattgttactgctcaaatcaatgattgaaacatgtggtaaactcaagagtccttttggaacagaaccttccaaacggttattactgacacgaa |
400 |
Q |
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| T |
51805076 |
ccggtcagattgttgctgctcaaatcaatgattgaaacatgtgataaactcaagagtccttttggaacagaaccttccaaacggttattactgacacgaa |
51805175 |
T |
|
| Q |
401 |
accttaacagaaacatgcaatttgaataactttctggtataacaccagagaaaaagttatccaaaacaagaaaatataacagtttacctccttgacagac |
500 |
Q |
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| T |
51805176 |
accttaacagaaacatgcaatttgaataactttctggtataacaccagagaaaaagttatccaaaacaagaaaatataacagtttacctccttgacagac |
51805275 |
T |
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| Q |
501 |
atgttctggcaaagg |
515 |
Q |
| |
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| T |
51805276 |
atgttctggcaaagg |
51805290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 7423234 - 7423196
Alignment:
| Q |
242 |
tcctctgaaggaaaagctcagacaagtttctagaatttc |
280 |
Q |
| |
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| T |
7423234 |
tcctctgatggaaaagttcagacaagtttctagaatttc |
7423196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 487
Target Start/End: Complemental strand, 7423012 - 7422984
Alignment:
| Q |
459 |
atccaaaacaagaaaatataacagtttac |
487 |
Q |
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| T |
7423012 |
atccaaaacaagaaaatataacagtttac |
7422984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 20017879 - 20017733
Alignment:
| Q |
90 |
cagcttgtttgcttgtagcataagcaagttaagctttctaaggttaccaatctcagaaggaattggaccagaaagaaagttataactgaaatcaattttg |
189 |
Q |
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||||||||| |||||| || |||||| ||||| ||||||||||||||||| | ||||| ||||||||| | ||||| ||||||||||||||||||| | |
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| T |
20017879 |
cagcttgttcccttgtaacacaagcaaattaagttttctaaggttaccaatttatgaagggattggaccatagagaaatttataactgaaatcaatttcg |
20017780 |
T |
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| Q |
190 |
acaaggttataagctctagagattgttggtgttaattgtcctgaaat |
236 |
Q |
| |
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|||||| || ||||| ||||||||| || |||| |||| |||||| |
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| T |
20017779 |
acaaggctaatagctcaagagattgtcggagttatatgtcttgaaat |
20017733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 402
Target Start/End: Complemental strand, 20017652 - 20017589
Alignment:
| Q |
339 |
atgtggtaaactcaagagtccttttggaacagaaccttccaaacggttattactgacacgaaac |
402 |
Q |
| |
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|||||||||||| ||||||| |||||||| ||||||| |||||||| ||||||| ||||||| |
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| T |
20017652 |
atgtggtaaacttaagagtcactttggaaccaaaccttctaaacggttgttactgatacgaaac |
20017589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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