View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18544_low_6 (Length: 530)
Name: NF18544_low_6
Description: NF18544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18544_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 310 - 516
Target Start/End: Complemental strand, 4202842 - 4202640
Alignment:
| Q |
310 |
gcacaggtgtcccaaacacattgaatgtgatcacaaattttccatttttagttgtgggtgttcttggtttagttcttactcttgaaggaggattttttac |
409 |
Q |
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| T |
4202842 |
gcacaggtgtcccaaacacattgaatgtgatcacaaattttccatttttagttgtgggtgttcttggtttagttcttactcttgaaggaggattttttac |
4202743 |
T |
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| Q |
410 |
cataaggttactacttaattacttctaatcattctcttatcactgttctaatacaattcactcactgtgattcatatgattaggtttctaatatgaggtg |
509 |
Q |
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| T |
4202742 |
cataaggttactacttaattacttctaatcattctcttatcactgttctaatacaatt----cactgtgattcatatgattaggtttctaatatgaggtg |
4202647 |
T |
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| Q |
510 |
tgttttg |
516 |
Q |
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| ||||| |
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| T |
4202646 |
ttttttg |
4202640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 4203091 - 4203006
Alignment:
| Q |
61 |
gaattggatggtggcacatgcaaccaaacaacaacaacaattgagaagattgaagataacaactcatcgtgttattgtagctacat |
146 |
Q |
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| T |
4203091 |
gaattggatggtggcacatgcaaccaaacaacaacagcaattgagaagattgaagataacaactcatcgtgttattgtagctacat |
4203006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 4202974 - 4202907
Alignment:
| Q |
178 |
tcccaaaattccacgctctcccactcaccaccaattcgctgacttgcgcaatcttcttggtaaaacaa |
245 |
Q |
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| T |
4202974 |
tcccaaaattccacgctctcccactcaccaccaattcgctgacttgcgcaatcttcttggtaaaacaa |
4202907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 4203125 - 4203097
Alignment:
| Q |
15 |
gaaaaaagcaagagaaagtgatgatgatg |
43 |
Q |
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| T |
4203125 |
gaaaaaagcaagagaaagtgatgatgatg |
4203097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 48088996 - 48089056
Alignment:
| Q |
311 |
cacaggtgtcccaaacacattgaatgtgatcacaaattttccatttttagttgtgggtgtt |
371 |
Q |
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|||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
48088996 |
cacaggagtaccaaacacattgaatgtgatgacaaatttcccatttttagttgtgggtgtt |
48089056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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