View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18544_low_7 (Length: 513)

Name: NF18544_low_7
Description: NF18544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18544_low_7
NF18544_low_7
[»] chr2 (13 HSPs)
chr2 (236-493)||(17245114-17245371)
chr2 (14-239)||(17244517-17244743)
chr2 (236-282)||(22963398-22963444)
chr2 (236-282)||(22998033-22998079)
chr2 (240-282)||(19313850-19313892)
chr2 (240-282)||(33902066-33902108)
chr2 (240-281)||(41465508-41465549)
chr2 (236-280)||(4264236-4264280)
chr2 (240-279)||(13711465-13711504)
chr2 (240-278)||(36641988-36642026)
chr2 (243-280)||(39788588-39788625)
chr2 (240-280)||(11366544-11366584)
chr2 (236-280)||(34441925-34441969)
[»] chr4 (18 HSPs)
chr4 (14-105)||(52451917-52452008)
chr4 (322-394)||(52451509-52451581)
chr4 (240-283)||(28003157-28003200)
chr4 (240-280)||(17272011-17272051)
chr4 (240-280)||(29584369-29584409)
chr4 (240-280)||(32912751-32912791)
chr4 (240-280)||(34361662-34361702)
chr4 (240-280)||(38812268-38812308)
chr4 (245-280)||(37663915-37663950)
chr4 (240-279)||(51204580-51204619)
chr4 (243-282)||(55241278-55241317)
chr4 (240-278)||(20097499-20097537)
chr4 (240-278)||(27396618-27396656)
chr4 (240-282)||(38811811-38811853)
chr4 (240-282)||(39397916-39397958)
chr4 (236-280)||(7152273-7152317)
chr4 (240-280)||(35021206-35021246)
chr4 (240-280)||(38011854-38011894)
[»] chr6 (9 HSPs)
chr6 (240-280)||(19631749-19631789)
chr6 (240-280)||(8513233-8513273)
chr6 (240-279)||(20768087-20768126)
chr6 (240-278)||(30353502-30353540)
chr6 (240-277)||(25440961-25440998)
chr6 (240-280)||(3880083-3880123)
chr6 (240-280)||(4318967-4319007)
chr6 (240-280)||(5627391-5627431)
chr6 (236-280)||(11084156-11084200)
[»] chr7 (13 HSPs)
chr7 (237-283)||(10359357-10359403)
chr7 (243-283)||(5657630-5657670)
chr7 (240-280)||(26524473-26524513)
chr7 (243-282)||(8861258-8861297)
chr7 (240-279)||(24211717-24211756)
chr7 (245-280)||(30055501-30055536)
chr7 (243-281)||(6546493-6546531)
chr7 (240-282)||(23402379-23402421)
chr7 (240-281)||(12165726-12165767)
chr7 (240-281)||(37109846-37109887)
chr7 (240-280)||(17842732-17842772)
chr7 (240-280)||(18797304-18797344)
chr7 (236-280)||(41765220-41765264)
[»] chr5 (9 HSPs)
chr5 (236-278)||(25501057-25501099)
chr5 (240-280)||(8742022-8742062)
chr5 (240-280)||(27330306-27330346)
chr5 (240-282)||(14409461-14409503)
chr5 (240-281)||(7693229-7693270)
chr5 (243-280)||(39572819-39572856)
chr5 (240-280)||(19119859-19119899)
chr5 (240-280)||(22616494-22616534)
chr5 (240-280)||(25513771-25513811)
[»] chr1 (8 HSPs)
chr1 (236-282)||(3309142-3309188)
chr1 (240-281)||(38823209-38823250)
chr1 (240-280)||(1547283-1547323)
chr1 (243-281)||(43579241-43579279)
chr1 (240-280)||(4150495-4150535)
chr1 (240-280)||(16415641-16415681)
chr1 (240-280)||(18422647-18422687)
chr1 (240-280)||(37619036-37619076)
[»] chr8 (10 HSPs)
chr8 (240-281)||(15009240-15009281)
chr8 (240-280)||(1150256-1150296)
chr8 (240-280)||(7998362-7998402)
chr8 (242-280)||(39099262-39099300)
chr8 (240-281)||(13307621-13307662)
chr8 (240-280)||(1835397-1835437)
chr8 (240-280)||(1879238-1879278)
chr8 (245-281)||(5300102-5300138)
chr8 (236-280)||(16447022-16447066)
chr8 (240-280)||(27082989-27083029)
[»] chr3 (12 HSPs)
chr3 (242-282)||(4015449-4015489)
chr3 (240-280)||(40640642-40640682)
chr3 (242-282)||(42204340-42204380)
chr3 (236-280)||(45879502-45879546)
chr3 (242-280)||(11466815-11466853)
chr3 (240-281)||(51213126-51213167)
chr3 (240-280)||(21193597-21193637)
chr3 (240-280)||(22450959-22450999)
chr3 (240-280)||(26941405-26941445)
chr3 (240-280)||(35844317-35844357)
chr3 (240-280)||(46994795-46994835)
chr3 (242-282)||(53811986-53812026)
[»] scaffold0061 (1 HSPs)
scaffold0061 (240-278)||(43959-43997)
[»] scaffold0017 (1 HSPs)
scaffold0017 (240-278)||(154790-154828)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 236 - 493
Target Start/End: Original strand, 17245114 - 17245371
Alignment:
Q  236 ctttaccagaaaagtcattcttacgacttcaccatagaattttccatccataaataagctcaacgtatctttgtttgattgtttgcaggtaaagtggttg 335  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  17245114 ctttaccagaaaagtcattctcgcgacttcaccatagaattttccatccataaataagctcaacagatctttgtttgattgtttgcaggtaaagtggttg 17245213  T
Q  336 cgtctaatttacaacgacttttctgcattttccacagatcaagaacatttaatctcattcaatagaagaaatgactccaatggagcagattatgttgaag 435  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  17245214 cgtctaatttacaacgacttttccgcattttccacagatcaagaacatttaatctcatttgatagaagaaatgactccaatggagcagattatgttgaag 17245313  T
Q  436 gcatgcttctattgaacaagccaccattgattctttccttttatccaccttctgatca 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17245314 gcatgcttctattgaacaagccaccattgattctttccttttatccaccttctgatca 17245371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 17244517 - 17244743
Alignment:
Q  14 gagaagaactcagaggtgttttatgccgttcttggaggactaggtcaatttggagtgataaccagagcaagaatacttcttggacctgcaccaactaggg 113  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17244517 gagaagaactcagaggtattttatgccgttcttggaggactaggtcaatttggagtgataaccagagcaagaatacttcttggacctgcaccaactaggg 17244616  T
Q  114 caagtattatcatctctttttcattcacacatatgtatgtttaaaactatcaataatcaattgagaaag-nnnnnnnnctccgtgacatgaattccttat 212  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||         ||||||||||||||||||||||    
T  17244617 caagtattatcatctctttttcgttcacacatatgtatgtttaaaactatcaataatcaattgtgaaagaaaaaaaatctccgtgacatgaattccttat 17244716  T
Q  213 caaagttgcggttcaataataaccttt 239  Q
     ||||||||||||||||||||||||||    
T  17244717 gaaagttgcggttcaataataaccttt 17244743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 22963444 - 22963398
Alignment:
Q  236 ctttaccagaaaagtcattcttacgacttcaccatagaattttccat 282  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||    
T  22963444 ctttaccagaaaagtcattcttatgacttcaccataaaattttccat 22963398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 22998033 - 22998079
Alignment:
Q  236 ctttaccagaaaagtcattcttacgacttcaccatagaattttccat 282  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||    
T  22998033 ctttaccagaaaagtcattcttatgacttcaccataaaattttccat 22998079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 19313892 - 19313850
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttccat 282  Q
    ||||||||||||||||| | |||||||||||||||||||||||    
T  19313892 accagaaaagtcattctaatgacttcaccatagaattttccat 19313850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 33902108 - 33902066
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttccat 282  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  33902108 accagaaaagtcattctaacgacttcatcatagaattttccat 33902066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 41465549 - 41465508
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcca 281  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  41465549 accagaaaagtcattctcatgacttcaccatagaattttcca 41465508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 4264236 - 4264280
Alignment:
Q  236 ctttaccagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||||||| | | |||||||||||||||||||||    
T  4264236 ctttaccagaaaagtcattatgatgacttcaccatagaattttcc 4264280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 13711504 - 13711465
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttc 279  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  13711504 accagaaaagtcattctgatgacttcaccatagaattttc 13711465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 278
Target Start/End: Complemental strand, 36642026 - 36641988
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaatttt 278  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  36642026 accagaaaagtcattctcatgacttcaccatagaatttt 36641988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 39788588 - 39788625
Alignment:
Q  243 agaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  39788588 agaaaagtcattcttatgacttcaccataaaattttcc 39788625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 11366544 - 11366584
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||| |||||||||||||| || ||||||||||||||||||    
T  11366544 accaaaaaagtcattcttatgatttcaccatagaattttcc 11366584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 34441925 - 34441969
Alignment:
Q  236 ctttaccagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||||||| |||||||||| | | |||||||||||||||||||||    
T  34441925 ctttaccaaaaaagtcattttcatgacttcaccatagaattttcc 34441969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 52452008 - 52451917
Alignment:
Q  14 gagaagaactcagaggtgttttatgccgttcttggaggactaggtcaatttggagtgataaccagagcaagaatacttcttggacctgcacc 105  Q
    ||||||||||||||  | |||||||| ||||||||||| ||||| ||||||||  | |||||| |||||||||||  |||||||||||||||    
T  52452008 gagaagaactcagaattattttatgcggttcttggaggtctaggccaatttgggattataacccgagcaagaatagctcttggacctgcacc 52451917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 394
Target Start/End: Complemental strand, 52451581 - 52451509
Alignment:
Q  322 aggtaaagtggttgcgtctaatttacaacgacttttctgcattttccacagatcaagaacatttaatctcatt 394  Q
    ||||||||||| | ||| || ||||||||||||| |||||||||||   ||| ||||||||||||||||||||    
T  52451581 aggtaaagtggctccgtttactttacaacgacttctctgcattttctggagaccaagaacatttaatctcatt 52451509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 28003157 - 28003200
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttccatc 283  Q
    ||||||||||||||||| | ||||||||||||||||||||||||    
T  28003157 accagaaaagtcattctcatgacttcaccatagaattttccatc 28003200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 17272051 - 17272011
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  17272051 accagaaaagtcattcccacgacttcaccatagaattttcc 17272011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 29584369 - 29584409
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  29584369 accagaaaagtcattcccacgacttcaccatagaattttcc 29584409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 32912751 - 32912791
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||| |||||||||||||| |||||||||||||||||||||    
T  32912751 accaaaaaagtcattcttatgacttcaccatagaattttcc 32912791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 34361662 - 34361702
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||| |||||||||||||| |||||||||||||||||||||    
T  34361662 accaaaaaagtcattcttatgacttcaccatagaattttcc 34361702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 38812268 - 38812308
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  38812268 accagaaaagtcattctcatgacttcaccatagaattttcc 38812308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 280
Target Start/End: Original strand, 37663915 - 37663950
Alignment:
Q  245 aaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||||||||||||| |||||||||||||||||||||    
T  37663915 aaaagtcattcttatgacttcaccatagaattttcc 37663950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 51204619 - 51204580
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttc 279  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  51204619 accagaaaagtcatttttatgacttcaccatagaattttc 51204580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 282
Target Start/End: Original strand, 55241278 - 55241317
Alignment:
Q  243 agaaaagtcattcttacgacttcaccatagaattttccat 282  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  55241278 agaaaagtcattctcatgacttcaccatagaattttccat 55241317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 20097499 - 20097537
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaatttt 278  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  20097499 accagaaaagtcattctcatgacttcaccatagaatttt 20097537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 278
Target Start/End: Complemental strand, 27396656 - 27396618
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaatttt 278  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  27396656 accagaaaagtcattctcatgacttcaccatagaatttt 27396618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 38811853 - 38811811
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttccat 282  Q
    ||||||||| ||||||| | |||||||||||||||||||||||    
T  38811853 accagaaaaatcattctcatgacttcaccatagaattttccat 38811811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 39397958 - 39397916
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttccat 282  Q
    |||| |||||||||||| | |||||||||||||||||||||||    
T  39397958 accataaaagtcattctaatgacttcaccatagaattttccat 39397916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 7152273 - 7152317
Alignment:
Q  236 ctttaccagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||||||||||||||||||   | |||||||||||||||||||||    
T  7152273 ctttaccagaaaagtcattagcatgacttcaccatagaattttcc 7152317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 35021206 - 35021246
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||| | | |||||||||||||||||||||    
T  35021206 accagaaaagtcattttcatgacttcaccatagaattttcc 35021246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 38011894 - 38011854
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  38011894 accagaaaagtcattctcatgatttcaccatagaattttcc 38011854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 19631789 - 19631749
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  19631789 accagaaaagtcattcttatgacttcaccatagaattttcc 19631749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 8513273 - 8513233
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  8513273 accagaaaagtcattctcatgacttcaccatagaattttcc 8513233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 20768126 - 20768087
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttc 279  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  20768126 accagaaaagtcattctcatgacttcaccatagaattttc 20768087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 30353502 - 30353540
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaatttt 278  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  30353502 accagaaaagtcattctcatgacttcaccatagaatttt 30353540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 25440998 - 25440961
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattt 277  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  25440998 accagaaaagtcattttaacgacttcaccatagaattt 25440961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 3880083 - 3880123
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||||||||||||||||   |||||||||||||||||||||    
T  3880083 accagaaaagtcattctcgtgacttcaccatagaattttcc 3880123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 4318967 - 4319007
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||| |||||||||||| | |||||||||||||||||||||    
T  4318967 accaaaaaagtcattctcatgacttcaccatagaattttcc 4319007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 5627431 - 5627391
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||| |||||||||||||| ||||||||| |||||||||||    
T  5627431 accaaaaaagtcattcttatgacttcaccttagaattttcc 5627391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 11084156 - 11084200
Alignment:
Q  236 ctttaccagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||| ||| | | |||||||||||||||||||||    
T  11084156 ctttaccagaaaagttattttcatgacttcaccatagaattttcc 11084200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 10359357 - 10359403
Alignment:
Q  237 tttaccagaaaagtcattcttacgacttcaccatagaattttccatc 283  Q
    |||||||||||||||||| | | ||||||||||||||||||||||||    
T  10359357 tttaccagaaaagtcattatcatgacttcaccatagaattttccatc 10359403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 5657630 - 5657670
Alignment:
Q  243 agaaaagtcattcttacgacttcaccatagaattttccatc 283  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  5657630 agaaaagtcattctcatgacttcaccatagaattttccatc 5657670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 26524473 - 26524513
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  26524473 accagaaaagtcattctcatgacttcaccatagaattttcc 26524513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 282
Target Start/End: Complemental strand, 8861297 - 8861258
Alignment:
Q  243 agaaaagtcattcttacgacttcaccatagaattttccat 282  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  8861297 agaaaagtcattctcatgacttcaccatagaattttccat 8861258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 24211756 - 24211717
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttc 279  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  24211756 accaaaaaagtcattcttatgacttcaccatagaattttc 24211717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 280
Target Start/End: Complemental strand, 30055536 - 30055501
Alignment:
Q  245 aaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||||||||||||| |||||||||||||||||||||    
T  30055536 aaaagtcattcttatgacttcaccatagaattttcc 30055501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 6546531 - 6546493
Alignment:
Q  243 agaaaagtcattcttacgacttcaccatagaattttcca 281  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  6546531 agaaaaatcattcttatgacttcaccatagaattttcca 6546493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 23402379 - 23402421
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttccat 282  Q
    ||||||||||||||||| | |||||| ||||||||||||||||    
T  23402379 accagaaaagtcattctcatgacttcgccatagaattttccat 23402421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 12165767 - 12165726
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcca 281  Q
    ||||||||||||||| | ||||||||||| ||||||||||||    
T  12165767 accagaaaagtcattttaacgacttcaccgtagaattttcca 12165726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 37109887 - 37109846
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcca 281  Q
    |||| |||||||||| ||| ||||||||||||||||||||||    
T  37109887 accaaaaaagtcatttttatgacttcaccatagaattttcca 37109846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 17842732 - 17842772
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  17842732 accaaaaaagtcatttttatgacttcaccatagaattttcc 17842772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 18797344 - 18797304
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||| |||||||||||| | |||||||||||||||||||||    
T  18797344 accaaaaaagtcattctcatgacttcaccatagaattttcc 18797304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 41765220 - 41765264
Alignment:
Q  236 ctttaccagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||| ||||||||||||||| | ||||||||||| |||||||||    
T  41765220 ctttatcagaaaagtcattctcatgacttcaccatggaattttcc 41765264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 25501057 - 25501099
Alignment:
Q  236 ctttaccagaaaagtcattcttacgacttcaccatagaatttt 278  Q
    ||||||||||||||||||||| | |||||||||||||||||||    
T  25501057 ctttaccagaaaagtcattctcatgacttcaccatagaatttt 25501099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 8742022 - 8742062
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  8742022 accagaaaagtcattctcatgacttcaccatagaattttcc 8742062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 27330346 - 27330306
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  27330346 accagaaaagtcattcccacgacttcaccatagaattttcc 27330306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 14409461 - 14409503
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttccat 282  Q
    ||||||||| ||||||| | |||||||||||||||||||||||    
T  14409461 accagaaaaatcattctcatgacttcaccatagaattttccat 14409503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 7693270 - 7693229
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcca 281  Q
    ||||||||||||||| | | ||||||||||||||||||||||    
T  7693270 accagaaaagtcattttaatgacttcaccatagaattttcca 7693229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 280
Target Start/End: Complemental strand, 39572856 - 39572819
Alignment:
Q  243 agaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||||||||||||| | |||||||||||||||||||||    
T  39572856 agaaaagtcattctcatgacttcaccatagaattttcc 39572819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 19119899 - 19119859
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||| |||||||||||| | |||||||||||||||||||||    
T  19119899 accacaaaagtcattctcatgacttcaccatagaattttcc 19119859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 22616534 - 22616494
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||| | | |||||||||||||||||||||    
T  22616534 accagaaaagtcattttcatgacttcaccatagaattttcc 22616494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 25513811 - 25513771
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||| ||||| | |||||||||||||||||||||||    
T  25513811 accagaaaaatcattttaacgacttcaccatagaattttcc 25513771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 3309188 - 3309142
Alignment:
Q  236 ctttaccagaaaagtcattcttacgacttcaccatagaattttccat 282  Q
    ||||||||||||||||||||| | ||||| |||||||||||||||||    
T  3309188 ctttaccagaaaagtcattctcatgactttaccatagaattttccat 3309142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 38823250 - 38823209
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcca 281  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  38823250 accagaaaagtcattctcatgacttcaccatagaattttcca 38823209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 1547323 - 1547283
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  1547323 accagaaaagtcattctcatgacttcaccatagaattttcc 1547283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 43579279 - 43579241
Alignment:
Q  243 agaaaagtcattcttacgacttcaccatagaattttcca 281  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  43579279 agaaaagtcattctcatgacttcaccatagaattttcca 43579241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 4150495 - 4150535
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||| | | |||||||||||||||||||||    
T  4150495 accagaaaagtcattatcatgacttcaccatagaattttcc 4150535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 16415681 - 16415641
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||||| | ||||||||| |||||||||||    
T  16415681 accagaaaagtcattctcatgacttcaccttagaattttcc 16415641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 18422687 - 18422647
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  18422687 accaaaaaagtcatttttatgacttcaccatagaattttcc 18422647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 37619036 - 37619076
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||| ||||||||||||||  ||||||||||||||||||||    
T  37619036 accaaaaaagtcattcttataacttcaccatagaattttcc 37619076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 15009281 - 15009240
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcca 281  Q
    |||| |||||||||||||| ||||||||||||||||||||||    
T  15009281 accaaaaaagtcattcttatgacttcaccatagaattttcca 15009240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 1150256 - 1150296
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||| |||||||||||||| |||||||||||||||||||||    
T  1150256 accaaaaaagtcattcttatgacttcaccatagaattttcc 1150296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 7998402 - 7998362
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  7998402 accagaaaagtcattctcatgacttcaccatagaattttcc 7998362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 39099262 - 39099300
Alignment:
Q  242 cagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  39099262 cagaaaagtcattctcatgacttcaccatagaattttcc 39099300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 13307662 - 13307621
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcca 281  Q
    ||||||||| ||||||| | ||||||||||||||||||||||    
T  13307662 accagaaaaatcattctcatgacttcaccatagaattttcca 13307621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 1835397 - 1835437
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||| |||||||||||| || ||||||||||||||||||||    
T  1835397 accaaaaaagtcattctaacaacttcaccatagaattttcc 1835437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 1879238 - 1879278
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||| |||||||||||| || ||||||||||||||||||||    
T  1879238 accaaaaaagtcattctaacaacttcaccatagaattttcc 1879278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 5300102 - 5300138
Alignment:
Q  245 aaaagtcattcttacgacttcaccatagaattttcca 281  Q
    |||||||||||| | ||||||||||||||||||||||    
T  5300102 aaaagtcattctcatgacttcaccatagaattttcca 5300138  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 16447022 - 16447066
Alignment:
Q  236 ctttaccagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||| ||||||||||||| | | |||||||||||||||||||||    
T  16447022 ctttatcagaaaagtcattttcatgacttcaccatagaattttcc 16447066  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 27082989 - 27083029
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||| ||| | |||||||||||||||||||||    
T  27082989 accagaaaagtcagtctgatgacttcaccatagaattttcc 27083029  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 4015489 - 4015449
Alignment:
Q  242 cagaaaagtcattcttacgacttcaccatagaattttccat 282  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  4015489 cagaaaagtcattctcatgacttcaccatagaattttccat 4015449  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 40640642 - 40640682
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  40640642 accagaaaagtcattctcatgacttcaccatagaattttcc 40640682  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 42204380 - 42204340
Alignment:
Q  242 cagaaaagtcattcttacgacttcaccatagaattttccat 282  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  42204380 cagaaaagtcattctcacgacttcacgatagaattttccat 42204340  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 45879502 - 45879546
Alignment:
Q  236 ctttaccagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||||||||| | ||||||| |||||||||||||    
T  45879502 ctttaccagaaaagtcattctcatgacttcagcatagaattttcc 45879546  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 11466853 - 11466815
Alignment:
Q  242 cagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  11466853 cagaaaagtcattctcaagacttcaccatagaattttcc 11466815  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 51213126 - 51213167
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcca 281  Q
    |||| |||||||||||| | ||||||||||||||||||||||    
T  51213126 accaaaaaagtcattctcatgacttcaccatagaattttcca 51213167  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 21193637 - 21193597
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||||| | ||||| |||||||||||||||    
T  21193637 accagaaaagtcattctcatgactttaccatagaattttcc 21193597  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 22450999 - 22450959
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||| ||||||| | |||||||||||||||||||||    
T  22450999 accagaaaaatcattctcatgacttcaccatagaattttcc 22450959  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 26941405 - 26941445
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||| |||| ||||||||| |||||||||||||||||||||    
T  26941405 accaaaaaaatcattcttatgacttcaccatagaattttcc 26941445  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 35844357 - 35844317
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    ||||||||||||||| | | |||||||||||||||||||||    
T  35844357 accagaaaagtcattatcatgacttcaccatagaattttcc 35844317  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 46994795 - 46994835
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaattttcc 280  Q
    |||| |||| ||||||||||||||||||| |||||||||||    
T  46994795 accaaaaaaatcattcttacgacttcaccgtagaattttcc 46994835  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 53811986 - 53812026
Alignment:
Q  242 cagaaaagtcattcttacgacttcaccatagaattttccat 282  Q
    ||||||||||||||| | ||||||||| |||||||||||||    
T  53811986 cagaaaagtcattctcatgacttcaccgtagaattttccat 53812026  T

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Target: scaffold0061 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 278
Target Start/End: Complemental strand, 43997 - 43959
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaatttt 278  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  43997 accaaaaaagtctttcttacgacttcaccatagaatttt 43959  T

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Target: scaffold0017 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 154790 - 154828
Alignment:
Q  240 accagaaaagtcattcttacgacttcaccatagaatttt 278  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  154790 accaaaaaagtctttcttacgacttcaccatagaatttt 154828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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