View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18544_low_8 (Length: 446)
Name: NF18544_low_8
Description: NF18544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18544_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 32725101 - 32725528
Alignment:
| Q |
1 |
cacagacaatcagacatcagtcacatttgtcaacaaaatttgagatccttcaacgatcaaaaaactaccataagtggaacttaacatgagacattaaacc |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32725101 |
cacacacaatcagacatcagtcacatttgtcaacaaaatttaagatccttcaacgatcaaaaaactaccataagtggaacttaacatgagacattaaacc |
32725200 |
T |
|
| Q |
101 |
aataattgtttccatttttagagggtcagtaaataaaaaacaattagaaaggcacatggcatgaataattgattgtttagctagtatagattagcactta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32725201 |
aataattgtttccatttttagagggtcagtaaataaaaaacaattagaaaggcacatggcatgaataattgattgtttagctagtatagattagcactta |
32725300 |
T |
|
| Q |
201 |
attaatcagcatcctataaatcagaatctgaagaagaacaagtccaaagggaagcagaaagcaaacgtcttgatttccaatccaacaccaacttattact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32725301 |
attaatcagcatcctataaatcagaatctgaagaagaacaagtccaaagggaagcagaaagcaaacgtcttgatttccaatccaacaccaacttattact |
32725400 |
T |
|
| Q |
301 |
acccacacccacctcttcaaccctatacccatcattaaaaagccctaacaacagcttcgcttgacaatgatttgcaaagctcaccggaactcccctaaac |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32725401 |
acccacacccacctcttcaaccctatacccatcattaaaaagccctaacaacagctttgcttgacaatgatttgcaaagctcaccggaactcccctaaac |
32725500 |
T |
|
| Q |
401 |
cctacctcacctaaccactccccccatg |
428 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
32725501 |
cctacctcacctaaccactccccccatg |
32725528 |
T |
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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 426
Target Start/End: Original strand, 24256355 - 24256537
Alignment:
| Q |
238 |
acaagtccaaagggaagcagaaagcaaacgtcttgatttccaatccaacaccaacttattactacccacacccacctcttcaaccctatacccatcatta |
337 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||| | ||||| |||||| |||||||||||||| ||| |
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| T |
24256355 |
acaagtccaaacagaagcagaaagcaaacgtcttgatttccaacctaacaccaacttattgtt------acccaactcttccaccctatacccatcgtta |
24256448 |
T |
|
| Q |
338 |
aaaagccctaacaacagcttcgcttgacaatgatttgcaaagctcaccggaactcccctaaaccctacctcacctaaccactcccccca |
426 |
Q |
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|| | || || |||| ||| ||||||||||| || || |||| | |||||| || |||||| || |||| |||||||||||||| |
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| T |
24256449 |
aataaacccaataacaactttgcttgacaatggttaccatagcttatgttaactcctctgaacccttccacacccaaccactcccccca |
24256537 |
T |
|
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