View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18544_low_9 (Length: 368)
Name: NF18544_low_9
Description: NF18544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18544_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 127 - 349
Target Start/End: Complemental strand, 48084561 - 48084339
Alignment:
| Q |
127 |
ataataccctgagaactttacggtactcggaaatgagataacggacataatctgggagagaaaattgacgagatcttgctgaaaaaggaaccaaataata |
226 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48084561 |
ataataccctgagaactttgcggtactcggaaatgagataacggacataatctgggagagaaaattgacgagatcttgctgaaaaaggaaccaaataata |
48084462 |
T |
|
| Q |
227 |
gttgttgacaaaatcattgccaccaagagtgatgagtacgagtgctctgttgactaggtttcttgctccttctgaaccaatgtgtgcacttactcttttc |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48084461 |
gttgttgacaaaatcattgccaccaagagtgatgagtacgagtgctctgttgactaggtttcttgctccttctgaaccaatgtgtgcacttactcttttc |
48084362 |
T |
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| Q |
327 |
tgatacaattcaaatagccttag |
349 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
48084361 |
tgatacaattcaaatagccttag |
48084339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 48084666 - 48084601
Alignment:
| Q |
48 |
cattgttaaacatgcaaccatgttcatattaattattaaatatcctttaacacttttggcaattgg |
113 |
Q |
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| T |
48084666 |
cattgttaaacatgcaaccatgttcatattaattattaaatatcctttaacacttttgtcaattgg |
48084601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 250
Target Start/End: Complemental strand, 48075125 - 48075013
Alignment:
| Q |
138 |
agaactttacggtactcggaaatgagataacggacataatctgggagagaaaattgacgagatcttgctgaaaaaggaaccaaataatagttgttgacaa |
237 |
Q |
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| T |
48075125 |
agaattttacgatactcagaaatgaggtacacaacataatctggaagtctaaattggcgtgatcttgcagaaaaaggtacaagaaaatagttgttcacaa |
48075026 |
T |
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| Q |
238 |
aatcattgccacc |
250 |
Q |
| |
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||||||| ||||| |
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| T |
48075025 |
aatcatttccacc |
48075013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 174 - 316
Target Start/End: Original strand, 35377077 - 35377219
Alignment:
| Q |
174 |
taatctgggagagaaaattgacgagatcttgctgaaaaaggaaccaaataatagttgttgacaaaatcattgccaccaagagtgatgagtacgagtgctc |
273 |
Q |
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|||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||| ||||| |||||| ||||||||| | |||| |
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| T |
35377077 |
taatctggaagagaaaattggcgagatcttgctgaaaatgggaccaaataataattgttgacaaaatcgttgcctccaagaacgatgagtacaattgctt |
35377176 |
T |
|
| Q |
274 |
tgttgactaggtttctt-gctccttctgaaccaatgtgtgcact |
316 |
Q |
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||| ||||| ||||||| ||| | |||| |||||| |||||||| |
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| T |
35377177 |
tgtggacta-gtttcttagcttcctctgcaccaatatgtgcact |
35377219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 318
Target Start/End: Original strand, 35358405 - 35358574
Alignment:
| Q |
149 |
gtactcggaaatgagataacggacataatctgggagagaaaattgacgagatcttgctgaaaaaggaaccaaataatagttgttgacaaaatcattgcca |
248 |
Q |
| |
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|||||| || |||||||| |||||| | ||| ||||||||||| |||||||| |||||||| || ||||||||||| || ||||||||||| ||||| |
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| T |
35358405 |
gtactcagatatgagataggtgacatagtttggaagagaaaattggcgagatctagctgaaaatgggaccaaataataattattgacaaaatcgttgcct |
35358504 |
T |
|
| Q |
249 |
ccaagagtgatgagtacgagtgctctgttgactaggtttcttgctccttctgaaccaatgtgtgcactta |
318 |
Q |
| |
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||||| |||||||||| | |||| |||||||||| | | | ||||| |||| |||||| |||||||||| |
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| T |
35358505 |
ccaagcatgatgagtacaattgctttgttgactagttgtttagctccctctgcaccaatttgtgcactta |
35358574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 35370606 - 35370712
Alignment:
| Q |
177 |
tctgggagagaaaattgacgagatcttgctgaaaaaggaaccaaataatagttgttgacaaaatcattgccaccaagagtgatgagtacgagtgctctgt |
276 |
Q |
| |
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||||| ||||||||||| ||||||||||||||||| || || ||||||| ||||| |||||||| ||||| |||| | |||||||||| |||||| ||| |
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| T |
35370606 |
tctggaagagaaaattggcgagatcttgctgaaaatggggcccaataataattgttaacaaaatcgttgcctccaataatgatgagtacaagtgctttgt |
35370705 |
T |
|
| Q |
277 |
tgactag |
283 |
Q |
| |
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||||||| |
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| T |
35370706 |
tgactag |
35370712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 29768432 - 29768496
Alignment:
| Q |
189 |
aattgacgagatcttgctgaaaaaggaaccaaataatagttgttgacaaaatcattgccaccaag |
253 |
Q |
| |
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||||||||||| || |||||||| ||| | | |||||||||||||||||||||| |||||||| |
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| T |
29768432 |
aattgacgagacctagctgaaaatggagtgagaaaatagttgttgacaaaatcattaccaccaag |
29768496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 6341675 - 6341754
Alignment:
| Q |
171 |
acataatctgggagagaaaattgacgagatcttgctgaaaaaggaaccaaataatagttgttgacaaaatcattgccacc |
250 |
Q |
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| T |
6341675 |
acataatcaggaagagcatattcacgagatctggctgagtaaggaaccaaataatagttgttcacaaaatcattcccacc |
6341754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 7386882 - 7386964
Alignment:
| Q |
190 |
attgacgagatcttgctgaaaaaggaaccaaataatagttgttgacaaaatcattgccaccaagagtgatgagtacgagtgct |
272 |
Q |
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|||||||||| ||||| ||| |||| ||||| || ||||| || ||||||||||||||||||| ||| ||||| || |||||| |
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| T |
7386882 |
attgacgagaccttgcagaataaggcaccaagtagtagttattcacaaaatcattgccaccaacagttatgagaacaagtgct |
7386964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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