View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18545_high_3 (Length: 425)

Name: NF18545_high_3
Description: NF18545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18545_high_3
NF18545_high_3
[»] chr5 (3 HSPs)
chr5 (1-410)||(43017386-43017795)
chr5 (155-410)||(35057433-35057672)
chr5 (1-97)||(35057137-35057230)
[»] chr7 (1 HSPs)
chr7 (294-345)||(38569757-38569809)
[»] chr6 (2 HSPs)
chr6 (185-275)||(14328897-14328987)
chr6 (185-275)||(14421907-14421997)


Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 43017386 - 43017795
Alignment:
Q  1 cctgagattacataacaagtcgaatttatctcagaggtcacaggagatgtaaccaagaatagaagaaaattggaagaggaaatggttttcttgtttgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43017386 cctgagattacataacaagtcgaatttatctcagaggtcacaggagatgtaaccaagaatagaagaaaattggaagaggaaatggttttcttgtttgttg 43017485  T
Q  101 cttatatatcatttttgtgttttgcatgcacaattcagcttttgaatgagtcacatatagggcaagacttattctaatattttatgaaaaattcagcttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43017486 cttatatatcatttttgtgttttgcatgcacaattcagcttttgaatgagtcacatatagggcaagacttattctaatattttatgaaaaattcagcttt 43017585  T
Q  201 tgaaagagtcacttgcataaaacccgtttatcaggtgagaaaaataaggcaaggcctgtaaattttgggaaaaattaaacgttaaagaaaattatttttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43017586 tgaaagagtcacttgcataaaacccgtttatcaggtgagaaaaataaggcaaggcctgtaaattttgggaaaaattaaacgttaaagaaaattatttttg 43017685  T
Q  301 gatagccttgatttttattaacttttgaaataaaataactctaaattcacaacattaagatcatagtataaacataactttgtgctataattccaaacag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43017686 gatagccttgatttttattaacttttgaaataaaataactctaaattcacaacattaagatcatagtataaacataactttgtgctataattccaaacag 43017785  T
Q  401 aatatttcat 410  Q
    ||||||||||    
T  43017786 aatatttcat 43017795  T

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Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 155 - 410
Target Start/End: Original strand, 35057433 - 35057672
Alignment:
Q  155 atatagggcaagacttattctaatattttatgaaaaattcagcttttgaaagagtcacttgcataaaacccgtttatcaggtgagaaaaataaggcaagg 254  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||    
T  35057433 atatagggcaagacatattctaatattttatgaaaaattcagcttttgaaagagtcacttgcataaaaaccgtttatgaggtgaaaaaaataaggcaagg 35057532  T
Q  255 cctgtaaattttgggaaaaattaaacgttaaagaaaattatttttggatagccttga-tttttattaacttttgaaataaaataactctaaattcacaac 353  Q
     | |||||||||||||                 ||  | |||||||||| || || | ||||||||||| |||||||||||||||||||||| |||| ||    
T  35057533 tcagtaaattttggga-----------------aacttcatttttggatggcgttaattttttattaacatttgaaataaaataactctaaaatcacgac 35057615  T
Q  354 attaagatcatagtataaacataactttgtgctataattccaaacagaatatttcat 410  Q
    ||||||||||||||| ||||| |||||||||||||||||||| | | ||||||||||    
T  35057616 attaagatcatagtaaaaacagaactttgtgctataattccagatataatatttcat 35057672  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 35057137 - 35057230
Alignment:
Q  1 cctgagattacataacaagtcgaatttatctcagaggtcacaggagatgtaaccaagaatagaagaaaattggaagaggaaatggttttcttgtttg 97  Q
    |||||||||||| ||||| || ||||||||| |||| |||| ||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  35057137 cctgagattacagaacaaatcaaatttatcttagagatcactggagatgtaaccaagaat---agaaaattggaagaggaaatggttttcttgtttg 35057230  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 345
Target Start/End: Original strand, 38569757 - 38569809
Alignment:
Q  294 atttttggatagccttgattttt-attaacttttgaaataaaataactctaaa 345  Q
    ||||||||||||||||  ||||| | |||||||||||||||||||||||||||    
T  38569757 atttttggatagccttatttttttactaacttttgaaataaaataactctaaa 38569809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 14328987 - 14328897
Alignment:
Q  185 tgaaaaattcagcttttgaaagagtcacttgcataaaacccgtttatcaggtgagaaaaataaggcaaggcctgtaaattttgggaaaaat 275  Q
    |||||||||| | |||||||  |||||||||||||||| | |||| | |||| |||||||| ||||||||   ||||| ||||| ||||||    
T  14328987 tgaaaaattctgattttgaataagtcacttgcataaaaactgttttttaggtcagaaaaatgaggcaaggttagtaaactttggaaaaaat 14328897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 14421997 - 14421907
Alignment:
Q  185 tgaaaaattcagcttttgaaagagtcacttgcataaaacccgtttatcaggtgagaaaaataaggcaaggcctgtaaattttgggaaaaat 275  Q
    |||||||||| | |||||||  |||||||||||||||| | |||| | |||| |||||||| ||||||||   ||||| ||||| ||||||    
T  14421997 tgaaaaattctgattttgaataagtcacttgcataaaaactgttttttaggtcagaaaaatgaggcaaggttagtaaactttggaaaaaat 14421907  T

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