View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18545_high_6 (Length: 345)
Name: NF18545_high_6
Description: NF18545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18545_high_6 |
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| [»] scaffold0370 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 38690619 - 38690303
Alignment:
| Q |
17 |
caatatctaattctggtctcagattccttccgttcacatagatactaccaaaaaatataaaatatctgtcatactctttgataacaacttaaagacatga |
116 |
Q |
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| T |
38690619 |
caatatctaattctggtctcagattccttccgttcacatagatactaccaaaaaatataaaatatctgtcatactctttgataacaacttaaagacatga |
38690520 |
T |
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| Q |
117 |
ataagctgcggctaaaccaaagccaattattatttaccttaatatgatattttatagtttgcttcaagcattcataattggaaatatttcccttctcaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38690519 |
ataagctgcggctaaaccaaagccaattattatttaccttaatatgatattttatagtttgcttcaagcattcatagttggaaatatttcccttctcaaa |
38690420 |
T |
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| Q |
217 |
atcattaccagaatgtatttccatatgtttgacttgaaattgttcaatttctatcacaagcttatccaaatcattcttccgtttaatctgctccaagttt |
316 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38690419 |
atcattaccagaatgtctttccatatgtttgacttgaaattgttcaatttctatcacgagcttatccaaatcattcttccgtttaatctgctccacgttt |
38690320 |
T |
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| Q |
317 |
ttaactttccaacagta |
333 |
Q |
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||||||||||||||||| |
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| T |
38690319 |
ttaactttccaacagta |
38690303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 276
Target Start/End: Complemental strand, 38637810 - 38637712
Alignment:
| Q |
178 |
cttcaagcattcataattggaaatatttcccttctcaaaatcattaccagaatgtatttccatatgtttgacttgaaattgttcaatttctatcacaag |
276 |
Q |
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| T |
38637810 |
cttcaaggattcataactggaaatatttgccttcacagaatcattaccagaaactctttccagatgttggattttgaatatttcaatttctatcacaag |
38637712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 267
Target Start/End: Complemental strand, 38589694 - 38589593
Alignment:
| Q |
166 |
ttttatagtttgcttcaagcattcataattggaaatatttcccttctcaaaatcattaccagaatgtatttccatatgtttgacttgaaattgttcaatt |
265 |
Q |
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||||||| ||| ||||||| | ||||| ||| |||||||||||||| || ||||||||| |||| | |||||| || || || |||||||||||||||| |
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| T |
38589694 |
ttttataattttcttcaaggagtcatagttgtaaatatttcccttcacagaatcattactagaagctctttccaaatattggatttgaaattgttcaatt |
38589595 |
T |
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| Q |
266 |
tc |
267 |
Q |
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|| |
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| T |
38589594 |
tc |
38589593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 38589799 - 38589744
Alignment:
| Q |
68 |
aaaatataaaatatctgtcatactctttgataacaacttaaagacatgaataagct |
123 |
Q |
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| T |
38589799 |
aaaatagaaaatatctatcagactctttgataacacctttaagacatgaataagct |
38589744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 268
Target Start/End: Complemental strand, 38633791 - 38633689
Alignment:
| Q |
166 |
ttttatagtttgcttcaagcattcataattggaaatatttcccttctcaaaatcattaccagaatgtatttccatatgtttgacttgaaattgttcaatt |
265 |
Q |
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||||||| ||| ||||||| ||||||| |||||||||||| | || || ||||||||| ||| | ||||||||| || | |||||||||||||||| |
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| T |
38633791 |
ttttataattttcttcaaggattcatagttggaaatattttcttttacaggatcattaccggaagctctttccatatattgaatttgaaattgttcaatt |
38633692 |
T |
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| Q |
266 |
tct |
268 |
Q |
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||| |
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| T |
38633691 |
tct |
38633689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 12986 - 12931
Alignment:
| Q |
69 |
aaatataaaatatctgtcatactctttgataacaacttaaagacatgaataagctg |
124 |
Q |
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| T |
12986 |
aaatagaaaatatctgtcacactcactgataacacctttaagacatgaataagctg |
12931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 12847 - 12802
Alignment:
| Q |
234 |
tttccatatgtttgacttgaaattgttcaatttctatcacaagctt |
279 |
Q |
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| T |
12847 |
tttccatatgttggatttggaattgttcaatttctatcacgagctt |
12802 |
T |
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