View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18545_high_7 (Length: 330)

Name: NF18545_high_7
Description: NF18545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18545_high_7
NF18545_high_7
[»] scaffold0027 (3 HSPs)
scaffold0027 (37-152)||(46346-46461)
scaffold0027 (235-320)||(46777-46862)
scaffold0027 (150-242)||(46533-46625)
[»] chr2 (1 HSPs)
chr2 (247-318)||(26605288-26605358)


Alignment Details
Target: scaffold0027 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 46346 - 46461
Alignment:
Q  37 tatgaaagagaaattgagtaacatagcaactcatttgtgaaatttgaccgagaagttaattcgttcttattaacattttattttcctagtttagtctgtt 136  Q
    |||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46346 tatgaaagagaaaccgagtaagatagcaactcatttgtgaaatttgaccgagaagttaattcgctcttattaacattttattttcctagtttagtctgtt 46445  T
Q  137 caagaaaaatgctaaa 152  Q
    ||||||||||||||||    
T  46446 caagaaaaatgctaaa 46461  T

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Target: scaffold0027; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 235 - 320
Target Start/End: Original strand, 46777 - 46862
Alignment:
Q  235 tttgcggcttatcgacgtcgtgttccctccatttttgtgcgtctgcatgttatctcctcgttgtcgtagcccttcctttgcctttg 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46777 tttgcggcttatcgacgtcgtgttccctccatttttgtgcgtctgcatgtcatctcctcgttgtcgtagcccttcctttgcctttg 46862  T

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Target: scaffold0027; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 46533 - 46625
Alignment:
Q  150 aaaccaaaccttcaccaaattgaagaactgaagcgtaattcattctatcattcagcagcttcattctattcactcgggctcgtgctttgcggc 242  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||    
T  46533 aaaccaaaccttcaccaaattgaagaactgaagcgtaattcatctcatcattcagcagcttcattctattcactccggctcgtgctttgcggc 46625  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 26605358 - 26605288
Alignment:
Q  247 cgacgtcgtgttccctccatttttgtgcgtctgcatgttatctcctcgttgtcgtagcccttcctttgcctt 318  Q
    ||||||||||||||||||||||| |||||||||| ||| ||||||||| ||| ||||||  |||||||||||    
T  26605358 cgacgtcgtgttccctccatttt-gtgcgtctgcgtgtcatctcctcggtgttgtagccgctcctttgcctt 26605288  T

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