View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18545_low_1 (Length: 613)
Name: NF18545_low_1
Description: NF18545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18545_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Original strand, 33440490 - 33441086
Alignment:
| Q |
1 |
ttacttaaatttattgatatcagtgtcgtgtccagtgtttcttagattctaaaattttgtttttataaatcaggatggtactcacggatcaaatcgcgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
33440490 |
ttacttaaatttattgatatcagtgtcgtgtccagtgtttcttagattctaacattttgtttttataaatcaggatggtaatcacagatcaaatcgcgag |
33440589 |
T |
|
| Q |
101 |
atgggaaactgaagacatgccatcaaggagaataatgggagattgtataatcctcccaaatggacaacttttgttcatcaatggtgcacaaaggggaaca |
200 |
Q |
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| T |
33440590 |
atgggaaactgaagacatgccatcaaggagaataatgggagattgtataatcctcccaaatggacaacttttgttcatcaatggtgcacaaaggggaaca |
33440689 |
T |
|
| Q |
201 |
gctggatggtgggatgctgatactccaaacctcacaccagcattgtatagtccagagaaactaaagggtcaaaggtttacacaattgaatccaacacaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33440690 |
gctggatggtgggatgctgatactccaaacctcacaccagcattgtataatccagagaaactaaagggtcaaaggtttacacaattgaatccaacacaaa |
33440789 |
T |
|
| Q |
301 |
tatcaagaatgtatcattcaacttcagcattgcttcctaatggaaaaatttgggtagctggaagtaacacacatgatacatacaaggatgtagatcaatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33440790 |
tatcaagaatgtatcattcaacttcagcattgcttcctaatggaaaaatttgggtagctggaagtaacacacatgatacatacaaggatgtagatcaatt |
33440889 |
T |
|
| Q |
401 |
cccaactgagactagagttgaaggattttctccaccatatttagatcctgctcttgacaagtttagaccaataattgatgaggtattttcaacaaagaat |
500 |
Q |
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| T |
33440890 |
cccaactgagactagagttgaaggattttctccaccatatttagatcctgctcttgacaagtttagaccaataattgatgaggtattttcaacaaagaat |
33440989 |
T |
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| Q |
501 |
ttgaagtatggtcacaaattagagacaatatttaaattgccagaagatattaataataatgtggctaagaatgacattaagattactatgtattttc |
597 |
Q |
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| T |
33440990 |
ttgaagtatggtcacaaattagagacaatatttaaattgccacaagatattaataataatgtggctaagaatgacattaagattactatgtattttc |
33441086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 117 - 442
Target Start/End: Original strand, 43343777 - 43344102
Alignment:
| Q |
117 |
atgccatcaaggagaataatgggagattgtataatcctcccaaatggacaacttttgttcatcaatggtgcacaaaggggaacagctggatggtgggatg |
216 |
Q |
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|||||||||||||||| ||||||||| | | ||||||||||||||| |||| ||||||||||||||||||||| || ||| ||| ||||||||||| |
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| T |
43343777 |
atgccatcaaggagaaccatgggagatgctcttatcctcccaaatggagaactattgttcatcaatggtgcacaatacggtacatctgcatggtgggatg |
43343876 |
T |
|
| Q |
217 |
ctgatactccaaacctcacaccagcattgtatagtccagagaaactaaagggtcaaaggtttacacaattgaatccaacacaaatatcaagaatgtatca |
316 |
Q |
| |
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|||| ||||| |||||| | ||||||| |||||| || | |||||| ||||||| ||| || || ||||| ||||||||||||| |
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| T |
43343877 |
ctgaccagccaaattacacacctgtgttgtataatccagataagcctaagggtttgaggtttaaggcgatgatgcctactcaaattgcaagaatgtatca |
43343976 |
T |
|
| Q |
317 |
ttcaacttcagcattgcttcctaatggaaaaatttgggtagctggaagtaacacacatgatacatacaaggatgtagatcaattcccaactgagactaga |
416 |
Q |
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||||||||| || ||||||||||||| || |||||||| |||||| ||||||||||| || || || ||| ||| | | ||||||||||||||| |
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| T |
43343977 |
ttcaacttcggctgtgcttcctaatggtaagatttgggttagtggaagcaacacacatgaaacttataaagataatgataagtatccaactgagactaga |
43344076 |
T |
|
| Q |
417 |
gttgaaggattttctccaccatattt |
442 |
Q |
| |
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||||||| ||| ||||| || ||||| |
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| T |
43344077 |
gttgaagcattctctcctccttattt |
43344102 |
T |
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