View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18545_low_10 (Length: 251)

Name: NF18545_low_10
Description: NF18545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18545_low_10
NF18545_low_10
[»] chr5 (3 HSPs)
chr5 (11-234)||(17182222-17182442)
chr5 (137-182)||(31742567-31742612)
chr5 (139-185)||(27713473-27713519)
[»] chr3 (4 HSPs)
chr3 (138-192)||(31424660-31424714)
chr3 (138-180)||(4637031-4637073)
chr3 (138-196)||(24713056-24713113)
chr3 (156-184)||(46358034-46358062)
[»] scaffold0050 (1 HSPs)
scaffold0050 (138-182)||(37110-37155)
[»] chr4 (3 HSPs)
chr4 (137-182)||(47105171-47105216)
chr4 (138-176)||(35851376-35851414)
chr4 (142-182)||(21983512-21983552)
[»] chr8 (1 HSPs)
chr8 (127-186)||(3679831-3679889)
[»] chr7 (3 HSPs)
chr7 (127-189)||(5252713-5252776)
chr7 (138-182)||(43344481-43344525)
chr7 (142-182)||(47456711-47456751)
[»] chr1 (2 HSPs)
chr1 (131-196)||(9081093-9081157)
chr1 (138-186)||(9613011-9613059)
[»] chr6 (1 HSPs)
chr6 (142-182)||(6944743-6944783)
[»] chr2 (1 HSPs)
chr2 (142-182)||(29487503-29487543)


Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 17182442 - 17182222
Alignment:
Q  11 catcatcaaccatcttcactgaactcaattctacctcaagattatcatggtatgcatattctctctaacctatgttgcatcaacacatcatattaaaaac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17182442 catcatcaaccatcttcactgaactcaattctacctcaagattatcatggtatgcatattctctctaacctatgttgcatcaacacatcatattaaaaac 17182343  T
Q  111 atttccagnnnnnnnattttgaacggaaaaatttattaaaaacatgatccctgctcaagacgaacagagaccagtatcagagattaaaaacatttccaat 210  Q
    ||||||||        |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17182342 atttccagttttt---tttttaacggaaaaatttattaaaaacatgatccctgctcaaggcgaacagagaccagtatcagagattaaaaacatttccaat 17182246  T
Q  211 ctctatgtgtcttgtgcaagtgct 234  Q
    ||||||||||||||||||||||||    
T  17182245 ctctatgtgtcttgtgcaagtgct 17182222  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 31742612 - 31742567
Alignment:
Q  137 aaaaatttattaaaaacatgatccctgctcaagacgaacagagacc 182  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||    
T  31742612 aaaattttattaaaaacctgatccctgcacaagacgaacagagacc 31742567  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 27713519 - 27713473
Alignment:
Q  139 aaatttattaaaaacatgatccctgctcaagacgaacagagaccagt 185  Q
    |||||||||||||||  |||||||| ||||||||||| |||||||||    
T  27713519 aaatttattaaaaaccagatccctgttcaagacgaactgagaccagt 27713473  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 31424714 - 31424660
Alignment:
Q  138 aaaatttattaaaaacatgatccctgctcaagacgaacagagaccagtatcagag 192  Q
    ||||| |||||||||| ||||||||| |||||||||||| |||||||||||||||    
T  31424714 aaaatatattaaaaacttgatccctgttcaagacgaacaaagaccagtatcagag 31424660  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 4637031 - 4637073
Alignment:
Q  138 aaaatttattaaaaacatgatccctgctcaagacgaacagaga 180  Q
    |||||||||| |||||||||||||||||||| | |||||||||    
T  4637031 aaaatttatttaaaacatgatccctgctcaaaatgaacagaga 4637073  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 24713113 - 24713056
Alignment:
Q  138 aaaatttattaaaaacatgatccctgctcaagacgaacagagaccagtatcagagatta 196  Q
    |||||||||| ||||| || ||| ||||||||| |||||||||||||||| ||||||||    
T  24713113 aaaatttatttaaaacttggtcc-tgctcaagatgaacagagaccagtataagagatta 24713056  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 184
Target Start/End: Original strand, 46358034 - 46358062
Alignment:
Q  156 gatccctgctcaagacgaacagagaccag 184  Q
    |||||||||||||||||||||||||||||    
T  46358034 gatccctgctcaagacgaacagagaccag 46358062  T

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Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 37155 - 37110
Alignment:
Q  138 aaaatttattaaa-aacatgatccctgctcaagacgaacagagacc 182  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  37155 aaaatttattaaacaacctgatccctgctcaagacgaacagagacc 37110  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 47105171 - 47105216
Alignment:
Q  137 aaaaatttattaaaaacatgatccctgctcaagacgaacagagacc 182  Q
    ||||||||||||||||  |||||||||| |||||||||||||||||    
T  47105171 aaaaatttattaaaaatctgatccctgcacaagacgaacagagacc 47105216  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 35851414 - 35851376
Alignment:
Q  138 aaaatttattaaaaacatgatccctgctcaagacgaaca 176  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  35851414 aaaatttattaaaaacctgatccctgcacaagacgaaca 35851376  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 21983512 - 21983552
Alignment:
Q  142 tttattaaaaacatgatccctgctcaagacgaacagagacc 182  Q
    |||||||||||   |||||||||||||||||||||||||||    
T  21983512 tttattaaaaatcagatccctgctcaagacgaacagagacc 21983552  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 3679889 - 3679831
Alignment:
Q  127 ttttgaacggaaaaatttattaaaaacatgatccctgctcaagacgaacagagaccagta 186  Q
    |||| ||||| |||||||||||||||| |||||| ||||||||| ||| |||||||||||    
T  3679889 tttttaacggcaaaatttattaaaaacctgatccttgctcaagaagaa-agagaccagta 3679831  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 5252776 - 5252713
Alignment:
Q  127 ttttgaacggaaaaatttattaaaaacat-gatccctgctcaagacgaacagagaccagtatca 189  Q
    |||| ||||| |||||||||||||||  | ||||||| |||||||||||||||||||| |||||    
T  5252776 tttttaacggtaaaatttattaaaaaatttgatccctactcaagacgaacagagaccactatca 5252713  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 43344481 - 43344525
Alignment:
Q  138 aaaatttattaaaaacatgatccctgctcaagacgaacagagacc 182  Q
    |||||||||| |||||  ||||||||||||||||||| |||||||    
T  43344481 aaaatttatttaaaactcgatccctgctcaagacgaatagagacc 43344525  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 47456711 - 47456751
Alignment:
Q  142 tttattaaaaacatgatccctgctcaagacgaacagagacc 182  Q
    ||||||||||||  |||| ||||||||||||||||||||||    
T  47456711 tttattaaaaaccagatctctgctcaagacgaacagagacc 47456751  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 9081093 - 9081157
Alignment:
Q  131 gaacggaaaaatttattaaaaacatgatccctgctcaagacgaacagagaccagtatcagagatta 196  Q
    |||||||||| |||||||||| | |||||||||||||||| ||||| | |||| |||| |||||||    
T  9081093 gaacggaaaattttattaaaa-cttgatccctgctcaagatgaacatataccaatatccgagatta 9081157  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 9613011 - 9613059
Alignment:
Q  138 aaaatttattaaaaacatgatccctgctcaagacgaacagagaccagta 186  Q
    |||||||||||||||| |||||| || | |||||||||| |||||||||    
T  9613011 aaaatttattaaaaacttgatccatgtttaagacgaacaaagaccagta 9613059  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 6944743 - 6944783
Alignment:
Q  142 tttattaaaaacatgatccctgctcaagacgaacagagacc 182  Q
    |||||||||||| |||||||||| ||||| |||||||||||    
T  6944743 tttattaaaaacctgatccctgcacaagatgaacagagacc 6944783  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 29487543 - 29487503
Alignment:
Q  142 tttattaaaaacatgatccctgctcaagacgaacagagacc 182  Q
    ||||||||||||  ||||||||||||||| |||||||||||    
T  29487543 tttattaaaaaccagatccctgctcaagatgaacagagacc 29487503  T

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