View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18545_low_12 (Length: 247)
Name: NF18545_low_12
Description: NF18545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18545_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 42608534 - 42608745
Alignment:
| Q |
19 |
atcaaatgttattcattgccatgattcagagagtgtcattcctaatttcctagtcaaaattaaactactcatactagtatatattactagaaaaaagggt |
118 |
Q |
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| T |
42608534 |
atcaaatgttattcattgccatgattcagagagtgtcattcctaatttcctagtcaaaattaaactactcatactagtatatattactagaaaaaagagt |
42608633 |
T |
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| Q |
119 |
tatcgttcacgtgaacttaactcaattagtaataacattgcattatatatacagatgcc-gaggtttaaacttgtacacctcactaagagatgaatttct |
217 |
Q |
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| T |
42608634 |
tatcgttcacgtgaacttaactcaattagtaataacattacattatatatacagatgccaaaggtttaaacttatacacctcattaagagatgaatttct |
42608733 |
T |
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| Q |
218 |
aaccacattttt |
229 |
Q |
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|||||||||||| |
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| T |
42608734 |
aaccacattttt |
42608745 |
T |
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Back To:
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 43400984 - 43400944
Alignment:
| Q |
128 |
cgtgaacttaactcaattagtaataacattgcattatatat |
168 |
Q |
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||||||||||||||||||||||| | ||||||||||||||| |
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| T |
43400984 |
cgtgaacttaactcaattagtaagagcattgcattatatat |
43400944 |
T |
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