View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18545_low_15 (Length: 210)
Name: NF18545_low_15
Description: NF18545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18545_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 21608615 - 21608784
Alignment:
| Q |
17 |
catcatcataacaaattgacatcctgcaggaacatgtttcgcaagttctctaaagtcataatctgcataacacaggtaacatatagccaccaaatacatc |
116 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||| |
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| T |
21608615 |
catcatcataacaaattgacatccttcaggaacatgcttcgcaagttctctaaagtcataatctgcataacacaagtaacagatagccaccaaacacatc |
21608714 |
T |
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| Q |
117 |
agagattgtacaaggagaaagagagcgaatacaatcaaagagaaaacatattaccaaaaatattagagtt |
186 |
Q |
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|||||||||| | |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
21608715 |
agagattgtatatggagaaagagagcgaaaacaattaaagagaaaacatattaccaaaaatattagagtt |
21608784 |
T |
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Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 21608030 - 21607864
Alignment:
| Q |
20 |
catcataacaaattgacatcctgcaggaacatgtttcgcaagttctctaaagtcataatctgcataacacaggtaacatatagccaccaaatacatcaga |
119 |
Q |
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|||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||| |
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| T |
21608030 |
catcataacaaattaacatccttcaggaacatgcttcgcaagttctctaaagtcataatctgcataacacaagtaacagatagccaccaaacacatcaga |
21607931 |
T |
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| Q |
120 |
gattgtacaaggagaaagagagcgaatacaatcaaagagaaaacatattaccaaaaatattagagtt |
186 |
Q |
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|||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21607930 |
gattttatatggagaaagagagcgaatacaatcaaagagaaaacatattaccaaaaatattagagtt |
21607864 |
T |
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