View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18545_low_3 (Length: 425)
Name: NF18545_low_3
Description: NF18545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18545_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 43017386 - 43017795
Alignment:
| Q |
1 |
cctgagattacataacaagtcgaatttatctcagaggtcacaggagatgtaaccaagaatagaagaaaattggaagaggaaatggttttcttgtttgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017386 |
cctgagattacataacaagtcgaatttatctcagaggtcacaggagatgtaaccaagaatagaagaaaattggaagaggaaatggttttcttgtttgttg |
43017485 |
T |
|
| Q |
101 |
cttatatatcatttttgtgttttgcatgcacaattcagcttttgaatgagtcacatatagggcaagacttattctaatattttatgaaaaattcagcttt |
200 |
Q |
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| T |
43017486 |
cttatatatcatttttgtgttttgcatgcacaattcagcttttgaatgagtcacatatagggcaagacttattctaatattttatgaaaaattcagcttt |
43017585 |
T |
|
| Q |
201 |
tgaaagagtcacttgcataaaacccgtttatcaggtgagaaaaataaggcaaggcctgtaaattttgggaaaaattaaacgttaaagaaaattatttttg |
300 |
Q |
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| T |
43017586 |
tgaaagagtcacttgcataaaacccgtttatcaggtgagaaaaataaggcaaggcctgtaaattttgggaaaaattaaacgttaaagaaaattatttttg |
43017685 |
T |
|
| Q |
301 |
gatagccttgatttttattaacttttgaaataaaataactctaaattcacaacattaagatcatagtataaacataactttgtgctataattccaaacag |
400 |
Q |
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| T |
43017686 |
gatagccttgatttttattaacttttgaaataaaataactctaaattcacaacattaagatcatagtataaacataactttgtgctataattccaaacag |
43017785 |
T |
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| Q |
401 |
aatatttcat |
410 |
Q |
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| T |
43017786 |
aatatttcat |
43017795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 155 - 410
Target Start/End: Original strand, 35057433 - 35057672
Alignment:
| Q |
155 |
atatagggcaagacttattctaatattttatgaaaaattcagcttttgaaagagtcacttgcataaaacccgtttatcaggtgagaaaaataaggcaagg |
254 |
Q |
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| T |
35057433 |
atatagggcaagacatattctaatattttatgaaaaattcagcttttgaaagagtcacttgcataaaaaccgtttatgaggtgaaaaaaataaggcaagg |
35057532 |
T |
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| Q |
255 |
cctgtaaattttgggaaaaattaaacgttaaagaaaattatttttggatagccttga-tttttattaacttttgaaataaaataactctaaattcacaac |
353 |
Q |
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| T |
35057533 |
tcagtaaattttggga-----------------aacttcatttttggatggcgttaattttttattaacatttgaaataaaataactctaaaatcacgac |
35057615 |
T |
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| Q |
354 |
attaagatcatagtataaacataactttgtgctataattccaaacagaatatttcat |
410 |
Q |
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| T |
35057616 |
attaagatcatagtaaaaacagaactttgtgctataattccagatataatatttcat |
35057672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 35057137 - 35057230
Alignment:
| Q |
1 |
cctgagattacataacaagtcgaatttatctcagaggtcacaggagatgtaaccaagaatagaagaaaattggaagaggaaatggttttcttgtttg |
97 |
Q |
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| T |
35057137 |
cctgagattacagaacaaatcaaatttatcttagagatcactggagatgtaaccaagaat---agaaaattggaagaggaaatggttttcttgtttg |
35057230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 345
Target Start/End: Original strand, 38569757 - 38569809
Alignment:
| Q |
294 |
atttttggatagccttgattttt-attaacttttgaaataaaataactctaaa |
345 |
Q |
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| T |
38569757 |
atttttggatagccttatttttttactaacttttgaaataaaataactctaaa |
38569809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 14328987 - 14328897
Alignment:
| Q |
185 |
tgaaaaattcagcttttgaaagagtcacttgcataaaacccgtttatcaggtgagaaaaataaggcaaggcctgtaaattttgggaaaaat |
275 |
Q |
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|||||||||| | ||||||| |||||||||||||||| | |||| | |||| |||||||| |||||||| ||||| ||||| |||||| |
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| T |
14328987 |
tgaaaaattctgattttgaataagtcacttgcataaaaactgttttttaggtcagaaaaatgaggcaaggttagtaaactttggaaaaaat |
14328897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 14421997 - 14421907
Alignment:
| Q |
185 |
tgaaaaattcagcttttgaaagagtcacttgcataaaacccgtttatcaggtgagaaaaataaggcaaggcctgtaaattttgggaaaaat |
275 |
Q |
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|||||||||| | ||||||| |||||||||||||||| | |||| | |||| |||||||| |||||||| ||||| ||||| |||||| |
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| T |
14421997 |
tgaaaaattctgattttgaataagtcacttgcataaaaactgttttttaggtcagaaaaatgaggcaaggttagtaaactttggaaaaaat |
14421907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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