View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18545_low_4 (Length: 380)
Name: NF18545_low_4
Description: NF18545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18545_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 33 - 266
Target Start/End: Original strand, 29377930 - 29378163
Alignment:
| Q |
33 |
ctttgttcaatttgaagcttgttctttgagcattagatgcttggttatgttttagattgcttattgtatcaaactctatcatttttgtgaatgtattaat |
132 |
Q |
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| T |
29377930 |
ctttgttcaatttgaagcttgttctttgagcattagatgcttggttatgttttagattgcttgttgtatcaaactctatcatttttgtgaatgtattaat |
29378029 |
T |
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| Q |
133 |
cactagcattaattttttgtattgcaattaagatagcttattaataagcacttatgaatagaattaataccagaatgatttgattaaggcttcttttaac |
232 |
Q |
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| T |
29378030 |
cactagcattaattttttgtattgcaattaagatagcttattaataagcacttatgaatagaattaataccagaatgatttgattaaggcttcttttaat |
29378129 |
T |
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| Q |
233 |
agaattgatttctgttggtatagtgttgtgagtc |
266 |
Q |
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| T |
29378130 |
agaattgatttctgttggtatagtgttgtgagtc |
29378163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 29378202 - 29378266
Alignment:
| Q |
305 |
caataggtaaaattttgctgtaagattccattatgctaattttggtatatgtttgatttcatatt |
369 |
Q |
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| T |
29378202 |
caataggtaaaattttgctgtaagattccattatgctaattttggtatatgtttgatttcatatt |
29378266 |
T |
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