View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18545_low_6 (Length: 356)
Name: NF18545_low_6
Description: NF18545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18545_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 337
Target Start/End: Original strand, 8249129 - 8249458
Alignment:
| Q |
10 |
attattctaatcgacatccctcaaacatgcatgtaaaaatcaattttgtgtctaaaattagtcttttcgtatccactcnnnnnnncttcttctttgaagt |
109 |
Q |
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| T |
8249129 |
attattctaatcgacatccctcaaacatgcatgtaaaaatcaattttgtgtctaaaattagtcttttcgtatccactctttttttcttcttctttgaagt |
8249228 |
T |
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| Q |
110 |
taacaaatcgctactctttgatcaatattgctactcttatagaaagattagtttgaaataaaatataaagcaaccatcggaagaaaatattggaccagtg |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8249229 |
taacaaatcgctactctttgatcaatattgctactcttatagaaagagtagtttgaaataaaatataaagcaaccatcggaagaaaatattggaccagtg |
8249328 |
T |
|
| Q |
210 |
tattg-tatcactgtcacaggttttttctata-gtagtattgatatcacagtttggtccaagaaatgagtcagaaaataagataatatcgatggcatcct |
307 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8249329 |
tattgatatcactgtcacaggttttttctataggtagtattgatatcacagtttggtccaagaaatgagtcagaaaataagataatatcgatggcatcct |
8249428 |
T |
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| Q |
308 |
ccaaattctggacccctccttataaatacc |
337 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
8249429 |
ccaaattctggacccctccttataaatacc |
8249458 |
T |
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