View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18545_low_9 (Length: 286)
Name: NF18545_low_9
Description: NF18545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18545_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 68 - 275
Target Start/End: Complemental strand, 12797273 - 12797064
Alignment:
| Q |
68 |
ttgctactcaagaaaaccttcgtgttagttggactaatggaactttggaacc-ttaatccaaatataattctaaggnnnnnnnnn-cttagactaatgat |
165 |
Q |
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| T |
12797273 |
ttgctactcaagaagaccttcgtgttagttggagtaatggagctttggaacccttaatccaaatataattctaaggttttttttttcttggactaatgat |
12797174 |
T |
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| Q |
166 |
ttcaagccttcaaatatataaaatactaattttgaatgtgagaatatcaaaatcttaaacctaccccaagagtattggagacccaagatcgtattttcaa |
265 |
Q |
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| T |
12797173 |
ttcaagccttcaaatatataaaatacaaattttgaatgttagaatatcaaaatcttaaacctaccccaagtgtattggagacccaagatcgtattttcta |
12797074 |
T |
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| Q |
266 |
ttgcattcat |
275 |
Q |
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|||||||||| |
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| T |
12797073 |
ttgcattcat |
12797064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 12797428 - 12797306
Alignment:
| Q |
20 |
ggaaactgaataatggtgtctctaggcatggtttttacgaattctcttttgctactcaagaaaaccttcgtgttagttggactaatggaactttggaacc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12797428 |
ggaaactgaataatggtgtctctaggcatggtttttacgagttctcttttgctactcaagaaaaccttcgtgttagttggagtaatggaactttggaacc |
12797329 |
T |
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| Q |
120 |
ttaatccaaatataattctaagg |
142 |
Q |
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| T |
12797328 |
ttaatccaaatataattctaagg |
12797306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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