View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18546_high_10 (Length: 207)
Name: NF18546_high_10
Description: NF18546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18546_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 52709322 - 52709493
Alignment:
| Q |
20 |
gggctgctgcaacttcattttctaaagaatttgaatcgaaaaattaaagctcaggtcattcgtggcttttttacgatagtttgtttgattcgcaccatat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
52709322 |
gggctgctgcaacttcattttctaaagaatttgaatcgaaaaattaaagctcaggtcattcgtgggttttttacgatagtttgtttgattcgcaccatat |
52709421 |
T |
|
| Q |
120 |
ggcttttttcataaacaaatcaagatcttatatcaaaaattgataaataaagagtaaagaagacgtcattat |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52709422 |
ggcttttttcataaacaaatcaagatcttatatcaaaaattgataaataaagagtaaagaagacgtcattat |
52709493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 26398806 - 26398718
Alignment:
| Q |
14 |
agcatagggctgctgcaacttcattttctaaagaatttgaatcgaaaaattaaagctcaggtcattcgtggcttttttacgatagtttg |
102 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26398806 |
agcatagggctttggcaacttcattttctaaagaatttgaattgaaaaattaaagctcaggtcattcgtaaattttttacgatagtttg |
26398718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University