View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18546_high_4 (Length: 349)
Name: NF18546_high_4
Description: NF18546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18546_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 39887069 - 39887375
Alignment:
| Q |
1 |
catgtactttaattttaaaagaaatatccatgtagttattgtgtttaattaaaagattatgggtcatttttgttgcttttttaacaaggatttgtttaac |
100 |
Q |
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| T |
39887069 |
catgtactttttttttaaaagaaatatccatgtagttattgtgtttaattaaaagattaggggtcatttttgttgcttttttaacaaggatttgtttaac |
39887168 |
T |
|
| Q |
101 |
gcgtataactaacttgttctttcttttgacagcgaattaatgtgagagttaaattgagtaagaaagctagctaggatctcccaagtgctgaaactctaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39887169 |
gcgtataactaacttgttctttcttttgacagcgaattaatgtgagagttaaattgagtaaaaaagctagctaggatctcccaagtgctgaaactctaaa |
39887268 |
T |
|
| Q |
201 |
agttgcttaaagagaaagtacttgcctgtttcaccaacctaacgtgtgtgtgaatgaactttttagatgagttaactaactaaccaacggtatcaactat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39887269 |
agttgcttaaagagaaagtacttgcctgtttcaccaacctaac----gtgtgaatgaactttttagacgagttaactaactaaccaacggtatcaactat |
39887364 |
T |
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| Q |
301 |
agataacgata |
311 |
Q |
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||||||||||| |
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| T |
39887365 |
agataacgata |
39887375 |
T |
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