View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18546_high_7 (Length: 271)

Name: NF18546_high_7
Description: NF18546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18546_high_7
NF18546_high_7
[»] chr1 (7 HSPs)
chr1 (110-267)||(47189293-47189450)
chr1 (85-199)||(51285246-51285361)
chr1 (103-199)||(48494876-48494972)
chr1 (85-185)||(47508236-47508337)
chr1 (110-147)||(19659744-19659781)
chr1 (103-147)||(5733180-5733224)
chr1 (103-147)||(12307934-12307978)
[»] chr7 (1 HSPs)
chr7 (126-199)||(32635363-32635436)
[»] chr8 (3 HSPs)
chr8 (84-185)||(39312533-39312635)
chr8 (108-147)||(30253437-30253476)
chr8 (85-128)||(21468245-21468289)
[»] chr6 (2 HSPs)
chr6 (102-184)||(11139352-11139434)
chr6 (103-185)||(92327-92409)
[»] chr2 (3 HSPs)
chr2 (22-84)||(40210356-40210417)
chr2 (103-147)||(4009273-4009317)
chr2 (85-185)||(43326101-43326202)
[»] scaffold1342 (1 HSPs)
scaffold1342 (103-147)||(1246-1290)
[»] chr5 (2 HSPs)
chr5 (102-188)||(13627360-13627446)
chr5 (85-155)||(3805676-3805747)
[»] scaffold0026 (1 HSPs)
scaffold0026 (85-160)||(91558-91634)


Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 110 - 267
Target Start/End: Original strand, 47189293 - 47189450
Alignment:
Q  110 ggatggccatggcctacccattatttttgggaaattaccaaaatatccttgagttaatatgaaatttacaaccatgacaccatcacttttttctgaaaca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  47189293 ggatggccatggcctacccattatttttgggaaattaccaaaatacccttgagttaatatgaaatatacaaccatgacactatcacttttttctgaaaca 47189392  T
Q  210 acgctcttctctcttatgtctggccttgcgcgagttcaactttcttctctctcgacca 267  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  47189393 acgctcttctctcttctgtctggccttgcgcgagttcaactttcttctctctagacca 47189450  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 199
Target Start/End: Original strand, 51285246 - 51285361
Alignment:
Q  85 cagtggcggagacacgtagg-acaggggatggccatggcctacccattatttttgggaaattaccaaaatatccttgagttaatatgaaatttacaacca 183  Q
    ||||||||||| ||||| || |||||||| ||||||||||  ||||||||||||| ||||||||||||||| |||| ||||||||| |||| ||||||||    
T  51285246 cagtggcggagccacgtggggacaggggaaggccatggccaccccattatttttgagaaattaccaaaatacccttaagttaatataaaatctacaacca 51285345  T
Q  184 tgacaccatcactttt 199  Q
    || |||| ||||||||    
T  51285346 tgccaccctcactttt 51285361  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 48494972 - 48494876
Alignment:
Q  103 ggacaggggatggccatggcctacccattatttttgggaaattaccaaaatatccttgagttaatatgaaatttacaaccatgacaccatcactttt 199  Q
    ||||||||||||||||||  |  |||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||| |||| ||| ||||    
T  48494972 ggacaggggatggccatgatcgtcccattatttgtggaaaattaccaaaatacccttgagttaatatgaaatttacaaccatgccaccttcagtttt 48494876  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 47508236 - 47508337
Alignment:
Q  85 cagtggcggagacacgt-aggacaggggatggccatggcctacccattatttttgggaaattaccaaaatatccttgagttaatatgaaatttacaacca 183  Q
    ||||||||||| ||||| ||||||||||||||||||||||  ||||| | |||  |||||||||||||||| ||||| ||||| ||||| ||||||||||    
T  47508236 cagtggcggagccacgtgaggacaggggatggccatggccaccccatcaatttgtggaaattaccaaaatacccttgggttaaaatgaattttacaacca 47508335  T
Q  184 tg 185  Q
    ||    
T  47508336 tg 47508337  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 19659781 - 19659744
Alignment:
Q  110 ggatggccatggcctacccattatttttgggaaattac 147  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  19659781 ggatggccatggcctccccattatttttgggaaattac 19659744  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 5733180 - 5733224
Alignment:
Q  103 ggacaggggatggccatggcctacccattatttttgggaaattac 147  Q
    |||| |||||||||||| ||||||||||||||| || ||||||||    
T  5733180 ggactggggatggccatagcctacccattatttatgagaaattac 5733224  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 12307978 - 12307934
Alignment:
Q  103 ggacaggggatggccatggcctacccattatttttgggaaattac 147  Q
    |||||||| ||||||||||||||||||||| || || ||||||||    
T  12307978 ggacagggtatggccatggcctacccattagttctgtgaaattac 12307934  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 32635363 - 32635436
Alignment:
Q  126 cccattatttttgggaaattaccaaaatatccttgagttaatatgaaatttacaaccatgacaccatcactttt 199  Q
    |||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||    
T  32635363 cccattatttatgagaaattaccaaaatacccttgagttaatatgaaatttacaaccatgccaccctcactttt 32635436  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 39312533 - 39312635
Alignment:
Q  84 gcagtggcggagacacgt-aggacaggggatggccatggcctacccattatttttgggaaattaccaaaatatccttgagttaatatgaaatttacaacc 182  Q
    |||||||||||| ||||| |||||| |||||||||||||||  ||||||| |||  |||||||||||||||| ||||| ||||| ||||| |||||||||    
T  39312533 gcagtggcggagccacgtgaggacatgggatggccatggccaccccattaatttgtggaaattaccaaaatacccttgggttaaaatgaattttacaacc 39312632  T
Q  183 atg 185  Q
    |||    
T  39312633 atg 39312635  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 30253476 - 30253437
Alignment:
Q  108 ggggatggccatggcctacccattatttttgggaaattac 147  Q
    ||||||||| |||||||| |||||||||||||||||||||    
T  30253476 ggggatggcaatggcctatccattatttttgggaaattac 30253437  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 21468245 - 21468289
Alignment:
Q  85 cagtggcggagacacgt-aggacaggggatggccatggcctaccc 128  Q
    ||||||||||||||||| |||||| || |||||||||||||||||    
T  21468245 cagtggcggagacacgtgaggacatggtatggccatggcctaccc 21468289  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 11139352 - 11139434
Alignment:
Q  102 aggacaggggatggccatggcctacccattatttttgggaaattaccaaaatatccttgagttaatatgaaatttacaaccat 184  Q
    ||||| ||||||||||||||||| |||||||||||   ||||||| ||||||| ||||  ||||| |||||||||||||||||    
T  11139352 aggactggggatggccatggcctccccattattttatagaaattatcaaaatacccttaggttaaaatgaaatttacaaccat 11139434  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 92327 - 92409
Alignment:
Q  103 ggacaggggatggccatggcctacccattatttttgggaaattaccaaaatatccttgagttaatatgaaatttacaaccatg 185  Q
    |||||||| ||||||||||||||||||||| || || |||||||| | |||| | ||||  |||| | || ||||||||||||    
T  92327 ggacagggtatggccatggcctacccattaattctgtgaaattactataatacctttgatataatcttaattttacaaccatg 92409  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 40210417 - 40210356
Alignment:
Q  22 tattttagattgagaagaaaaagtatgggtcatgcaaactggtgtttccgagcactggttaag 84  Q
    |||||||||||||||||||||| |||||||||||||||| |||| || |||||||||||||||    
T  40210417 tattttagattgagaagaaaaa-tatgggtcatgcaaaccggtgctttcgagcactggttaag 40210356  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 4009273 - 4009317
Alignment:
Q  103 ggacaggggatggccatggcctacccattatttttgggaaattac 147  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||    
T  4009273 ggacaggggatggccatggcctgcccattatttttgtgaaattac 4009317  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 43326101 - 43326202
Alignment:
Q  85 cagtggcggagacacgt-aggacaggggatggccatggcctacccattatttttgggaaattaccaaaatatccttgagttaatatgaaatttacaacca 183  Q
    ||||||||||| ||| | ||||||||| || | |||||||||||||||| || || |||||||| | |||| ||||||  |||| | || ||||||||||    
T  43326101 cagtggcggagccacatgaggacagggtatagtcatggcctacccattaattctgtgaaattactataatacccttgatataattttaattttacaacca 43326200  T
Q  184 tg 185  Q
    ||    
T  43326201 tg 43326202  T

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Target: scaffold1342 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1342
Description:

Target: scaffold1342; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 1246 - 1290
Alignment:
Q  103 ggacaggggatggccatggcctacccattatttttgggaaattac 147  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||    
T  1246 ggacaggggatggccatggcctgcccattatttttgtgaaattac 1290  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 188
Target Start/End: Complemental strand, 13627446 - 13627360
Alignment:
Q  102 aggacaggggatggccatggcctacccattatttttgggaaattaccaaaatatccttgagttaatatgaaatttacaaccatgaca 188  Q
    ||||||||||||||||||||||  ||||||| |||    ||||||||||||||  ||||  |||| ||||| |||||||||||||||    
T  13627446 aggacaggggatggccatggccaccccattaatttgtaaaaattaccaaaatactcttggattaaaatgaattttacaaccatgaca 13627360  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 3805747 - 3805676
Alignment:
Q  85 cagtggcggagacacgt-aggacaggggatggccatggcctacccattatttttgggaaattaccaaaatat 155  Q
    ||||||| ||| ||||| ||||| ||| ||||||||||||||||||||| || ||||||| ||||| |||||    
T  3805747 cagtggcagagccacgtgaggactgggtatggccatggcctacccattaattctgggaaaataccataatat 3805676  T

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Target: scaffold0026 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 91558 - 91634
Alignment:
Q  85 cagtggcggagacacgt-aggacaggggatggccatggcctacccattatttttgggaaattaccaaaatatccttg 160  Q
    |||||| |||| ||||| ||||||||| |||||||||||||||||| ||||| || ||||||| || |||| |||||    
T  91558 cagtggtggagccacgtgaggacagggtatggccatggcctacccagtatttctgtgaaattatcataatacccttg 91634  T

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