View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18546_low_1 (Length: 684)
Name: NF18546_low_1
Description: NF18546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18546_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 544; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 19 - 677
Target Start/End: Original strand, 5822510 - 5823184
Alignment:
| Q |
19 |
agaaataggtgtaggtgcagatgctggtgctaacgcaatatcctgtgaaatcgatgaagcagggccaagtgcagctcctgagctagtaagttcgattgta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
5822510 |
agaaataggtgtaggtgcagatgctggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcaattgta |
5822609 |
T |
|
| Q |
119 |
gcacgacgagggttgttcttgtgtttctcacaaagttccggcaaaaatactcctagagtcacatgaatgcagcttagttattgtataacaaaaataaaag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5822610 |
gcacgacgagggttgttcttgtgtttctcacaaagttccggcaaaaatactcctagagtcacatgaatgcagcttagttattgtataacaaaaataaaag |
5822709 |
T |
|
| Q |
219 |
gtgaaaatcaaagcagccctaatgttacatatactaaattatttgaacgt------------------tatcttttagtagagctcattacccacttgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5822710 |
gtgaaaatcaaagcagccctaatgttacatatactaaattatttgaacgtggattctccggaacgatttatcttttagtagagctcattacccacttgaa |
5822809 |
T |
|
| Q |
301 |
ctgaatcacttagttattttcttatatcatgtattggtcttagggaagtaannnnnnnnnnattctcattgactttgacaaatgtatgtgatgatggtaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5822810 |
ctgaatcacttagttattttcttatatcatgtattggtctt-gggaagtaaatttttttttattctcattgactttgacaaatgtatgtgatgatggtaa |
5822908 |
T |
|
| Q |
401 |
ataaaatagtagcattaacaaacaattgttaccttctccagcagccaaattgaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaa |
500 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5822909 |
ataaaatagt-gcattaacaaacaattgttaccttctccagcagccaaattaaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaa |
5823007 |
T |
|
| Q |
501 |
caaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgtctcta |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
5823008 |
caaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttctacacattcgtctgtctcta |
5823107 |
T |
|
| Q |
601 |
tgtatgctgctattctctccaccataacttcagatgttcgacattgatactcggtttcaccattgatattcatctca |
677 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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|
| T |
5823108 |
tgtatgctgctattctctccaccataacttcagatgttcggcattgatactcggtttcaccattgatattcttctca |
5823184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 268 - 677
Target Start/End: Complemental strand, 5829102 - 5828693
Alignment:
| Q |
268 |
ttatcttttagtagagctcattacccacttgaactgaatcacttagttattttcttatatcatgtattggtcttagggaagtaannnnnnnnnn--attc |
365 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||||| |||| |
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|
| T |
5829102 |
ttatcttctagtatagctcattaccaacttgaactgaatcagttaattattttcttatatcatgtatttgtctt-gggaagtaaaatattttttttattc |
5829004 |
T |
|
| Q |
366 |
tcattgactttgacaaatgtatgtgatgatggtaaataaaatagtagcattaacaaacaattgttaccttctccagcagccaaattgaagaaaaggtcaa |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| ||||||||||||| |
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| T |
5829003 |
acattgactttgacaaatgtatgtgatgatggtaaataaaatagt-gcattaacaaacaagtcttaccttctccagcagccaaattaaagaaaaggtcaa |
5828905 |
T |
|
| Q |
466 |
caatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatc |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5828904 |
caatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatc |
5828805 |
T |
|
| Q |
566 |
aacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataacttcagatgttcgacattgatactcggtttcaccattg |
665 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
5828804 |
aacaccacatgcttccacacattgatctgtctctatgtatgctgctattctctccaccataacttcagatgttcggcattgatactcggtttcaccattg |
5828705 |
T |
|
| Q |
666 |
atattcatctca |
677 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
5828704 |
atattcttctca |
5828693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 30 - 205
Target Start/End: Complemental strand, 5829368 - 5829193
Alignment:
| Q |
30 |
taggtgcagatgctggtgctaacgcaatatcctgtgaaatcgatgaagcagggccaagtgcagctcctgagctagtaagttcgattgtagcacgacgagg |
129 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
5829368 |
taggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcaattgtagcacgacgagg |
5829269 |
T |
|
| Q |
130 |
gttgttcttgtgtttctcacaaagttccggcaaaaatactcctagagtcacatgaatgcagcttagttattgtata |
205 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| |
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|
| T |
5829268 |
gttggtcttgtgtttctcacaaagttccggcaaaaatactcctgttgtcacattaatgcagcttagttatcgtata |
5829193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 429 - 666
Target Start/End: Original strand, 5832814 - 5833051
Alignment:
| Q |
429 |
ttaccttctccagcagccaaattgaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaa |
528 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||| || || ||||| | |||||| ||| || ||||| |||| ||||| | ||||||| |
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|
| T |
5832814 |
ttaccctctccagcagccatattgaagaaaaggtcaacaatgttagggcactttttgtaacaagctggtgagcaaagtttgccggtgaattgtggctcaa |
5832913 |
T |
|
| Q |
529 |
agaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataac |
628 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| ||||| |
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|
| T |
5832914 |
agaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattgatctgtctctatgtactctgaaattctctccactataac |
5833013 |
T |
|
| Q |
629 |
ttcagatgttcgacattgatactcggtttcaccattga |
666 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
5833014 |
ttcagatgttctacattgatactcaatttcaccattga |
5833051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 31 - 172
Target Start/End: Original strand, 5831980 - 5832121
Alignment:
| Q |
31 |
aggtgcagatgctggtgctaacgcaatatcctgtgaaatcgatgaagcagggccaagtgcagctcctgagctagtaagttcgattgtagcacgacgaggg |
130 |
Q |
| |
|
|||||||| ||| ||||||||| |||| |||| ||||| || ||||| ||||||| ||||||||| ||||| ||| |||| |||||||||||||| |
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|
| T |
5831980 |
aggtgcagctgcaggtgctaacacaatgtcctctgaaactgaagaagccgggccaaatgcagctccggagctcacaagctcgaccatagcacgacgaggg |
5832079 |
T |
|
| Q |
131 |
ttgttcttgtgtttctcacaaagttccggcaaaaatactcct |
172 |
Q |
| |
|
||| |||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
5832080 |
ttggtcttgtgtttctcacatagttctggcaaaaatactcct |
5832121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 429 - 653
Target Start/End: Original strand, 24038434 - 24038658
Alignment:
| Q |
429 |
ttaccttctccagcagccaaattgaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaa |
528 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||| || || | ||||||||| |||||||| ||| |||||| | ||||||| |
|
|
| T |
24038434 |
ttaccttccccagcagccaaattgaagtaaaggtcaacaatattggggcaattttggtaacaagatgatgaacaaagtttggctgtgaattgtggctcaa |
24038533 |
T |
|
| Q |
529 |
agaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataac |
628 |
Q |
| |
|
|| ||||| || ||||| || ||| || | || ||||| |||||||||| ||||||||| ||||||||||||||| | || |||| ||||| || || |
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|
| T |
24038534 |
gcaatgcatcggaagaaattccgacaaaattcctttcaactccacatgctttcacacattgatctgtctctatgtatcccgccattcgctccaacactac |
24038633 |
T |
|
| Q |
629 |
ttcagatgttcgacattgatactcg |
653 |
Q |
| |
|
||| ||||| | ||||||||||||| |
|
|
| T |
24038634 |
ttctgatgtcctacattgatactcg |
24038658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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