View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18546_low_3 (Length: 380)
Name: NF18546_low_3
Description: NF18546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18546_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 21242869 - 21242506
Alignment:
| Q |
1 |
tgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatcggtctgtttcacatcgttttctggtaattctgttact |
100 |
Q |
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| T |
21242869 |
tgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatcggtctgtttcacatcgttttctggtaattctgttact |
21242770 |
T |
|
| Q |
101 |
tcccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgcattacctattagatataaagtttgttatgtagagaatgatg |
200 |
Q |
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| T |
21242769 |
tcccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgcattacctattagatataaagtttgttatgtagagaatgatg |
21242670 |
T |
|
| Q |
201 |
agaacagctaactagtcaaactataactaaccaatctaactaactttgtatataatattacccgaattgatgataattgctggaaagttgaaattgaaac |
300 |
Q |
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| T |
21242669 |
agaacagctaactagtcaaactataactaaccaatctaactaactttgtatataatattacccgaattaatgataattgctggaaagttgaaattgaaac |
21242570 |
T |
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| Q |
301 |
tcttcactttgctccataattcagggacagtgatgactagtttaggattggaatccttgatttg |
364 |
Q |
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| T |
21242569 |
tcttcactttgctccataattcagggacagtgatgactagtttaggattggaatccttgatttg |
21242506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 21258637 - 21258411
Alignment:
| Q |
2 |
gtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatcggtctgtttcacatcgttttctggtaattctgttactt |
101 |
Q |
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| T |
21258637 |
gtgagtatcacacctttgctcactcctgtagttcctgatgagtacagaagt-------tgtcagtctgtttcacgttgctttctggtatttctgttactt |
21258545 |
T |
|
| Q |
102 |
cccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgcattacctattagatataaagtttgttatgtagagaatgatga |
201 |
Q |
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|||| |||||||| |||||||||||||||||| ||||||| |||| | |||| |||||||||||||| |||||||||||||||||| ||| ||||||||| |
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| T |
21258544 |
ccccagctgattctatcaacgcctcaaaactcgtgaagttcgaatttcaacctgttgcattacctatcagatataaagtttgttatatagcgaatgatga |
21258445 |
T |
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| Q |
202 |
gaacagctaactagtcaaactataactaaccaat |
235 |
Q |
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| T |
21258444 |
gtacagctaactagtgtaactatcactatccaat |
21258411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 21254122 - 21253893
Alignment:
| Q |
8 |
atcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatcggtctgtttcacatcgttttctggtaattctgttacttcccctg |
107 |
Q |
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||||| || |||||||||||||| ||||||||||||||||| | |||||||||||| | ||||||||||||||||||||||||||||||||||| | || |
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| T |
21254122 |
atcacgcccttgctcactcctgttgttcctgatgagtacaacaaagccgctgtatcgctttgtttcacatcgttttctggtaattctgttacttctcatg |
21254023 |
T |
|
| Q |
108 |
ctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgc----attacctattagatataaagtttgt--tatgtagagaatgatga |
201 |
Q |
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||| ||||||||||| ||||||||| |||||||||||| |||||||||| | |||||||||||||| |||||||||| ||| || || ||||| | |
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| T |
21254022 |
ctgtttcaatcaacgactcaaaactggtgaagtttgaatttgaacccgttacattaattacctattagatgtaaagtttgttatatataaagtatgataa |
21253923 |
T |
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| Q |
202 |
gaacagctaactagtcaaactataactaac |
231 |
Q |
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||||||||||||||| || |||||||||| |
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| T |
21253922 |
gaacagctaactagtttaattataactaac |
21253893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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