View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18547_high_2 (Length: 360)
Name: NF18547_high_2
Description: NF18547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18547_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 18290966 - 18291278
Alignment:
| Q |
19 |
ttagtcaattgactctattgaattgttgttcatattaaaatgactcaaaattaatatagagttggtcaatgttgctcgaacatgtannnnnnnnn-agtg |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| | || |
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| T |
18290966 |
ttagtcaattgaatctattgaattgttgttcatattaaaatgaatcaaaattaataaggagttggtcaatgttgctcgaacatgtactttattttgaatg |
18291065 |
T |
|
| Q |
118 |
cctatttattcaatcgtcttttacatttaagtcattcaatattaaaacaattaaccattaaatctttttaaccattttcacccttaaaatccgaaccaaa |
217 |
Q |
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| T |
18291066 |
cctatttattcaatcgtcttttacatttaagtcattcaatattaaaacaattaaccatt-------tttaaccattttcacccttaaaatccgaaccaaa |
18291158 |
T |
|
| Q |
218 |
ttcagagatatttttaaaataactatacacacacatgagtttacgtacannnnnnnnnnaaattcagatgatcatgagtttacttatgtgtggtgttact |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||| |
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| T |
18291159 |
ttcagagatatttttaaaataactatacacacacatgagtttacgtaca--tttttttaaagttcagatgatcatgagtttacttatgtgtgttgttact |
18291256 |
T |
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| Q |
318 |
tccttctaacctcttttcttct |
339 |
Q |
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||||||||| ||||||||||| |
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| T |
18291257 |
tccttctaatttcttttcttct |
18291278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 26291256 - 26291341
Alignment:
| Q |
19 |
ttagtcaattgactctattgaattgttgttcatattaaaatgactcaaaattaatatagagttggtcaatgttgctcgaacatgta |
104 |
Q |
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| T |
26291256 |
ttagtcaattgaatctattgaattgttgttcatattgaaatgaatcaaaattaataaggagttggtcaatgatgctcgaacatgta |
26291341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 508645 - 508730
Alignment:
| Q |
19 |
ttagtcaattgactctattgaattgttgttcatattaaaatgactcaaaattaatatagagttggtcaatgttgctcgaacatgta |
104 |
Q |
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|||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||| ||||||||||||| |||||||||||||| |
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| T |
508645 |
ttagtcaattgaatctgttgaattgttgttcatattgaaatgaatcaaaattaataaggagttggtcaatgatgctcgaacatgta |
508730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 6932583 - 6932668
Alignment:
| Q |
19 |
ttagtcaattgactctattgaattgttgttcatattaaaatgactcaaaattaatatagagttggtcaatgttgctcgaacatgta |
104 |
Q |
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|||||||||||| ||| ||||||| ||||||||||| |||||| |||||||||||| ||||||||||||| |||||||||||||| |
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| T |
6932583 |
ttagtcaattgaatctgttgaatttttgttcatattgaaatgaatcaaaattaataaggagttggtcaatgatgctcgaacatgta |
6932668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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