View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18547_high_3 (Length: 311)

Name: NF18547_high_3
Description: NF18547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18547_high_3
NF18547_high_3
[»] chr4 (3 HSPs)
chr4 (52-306)||(40121595-40121846)
chr4 (52-270)||(40092811-40093026)
chr4 (52-270)||(40125283-40125498)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 52 - 306
Target Start/End: Complemental strand, 40121846 - 40121595
Alignment:
Q  52 gggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaactaggtgtacatattacctccttttcctcataattcttt 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  40121846 gggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaactaggtgt---tattacctccttttcctcataattcttt 40121750  T
Q  152 ccaaaatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggcactaatggagaggacacttcaacattgtttctgcttgatagat 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40121749 ccaaaatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggcactaatggagaggacacttcaacattgtctctgcttgatagat 40121650  T
Q  252 ttttcattggaagagaaggaacaatgttcttagcagtggtatggtctgtgctgct 306  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  40121649 ttttcattggaagagaaggaacaatattcttagcagtggtatggtctgtggtgct 40121595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 52 - 270
Target Start/End: Complemental strand, 40093026 - 40092811
Alignment:
Q  52 gggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaactaggtgtacatattacctccttttcc---tcataattc 148  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||   ||||||||||| ||||   |||| ||||    
T  40093026 gggaggaacaaaacaccagttaccaaaagaagttggtgagagcaaattcaattccaacaaactaggggt---tattacctcctcttcctgatcattattc 40092930  T
Q  149 tttccaaaatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggcactaatggagaggacacttcaacattgtttctgcttgata 248  Q
    |||||||||||||||||||||||||| ||||||||||   || ||||||| ||||| ||| ||||||||| ||||||||||||| ||| | || |||  |    
T  40092929 tttccaaaatattcagcttgaaagtactgataccagc---tattagtagtactcactggctctaatggaggggacacttcaacactgtctttgtttgtga 40092833  T
Q  249 gatttttcattggaagagaagg 270  Q
      |||||||||||||| |||||    
T  40092832 agtttttcattggaagggaagg 40092811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 52 - 270
Target Start/End: Complemental strand, 40125498 - 40125283
Alignment:
Q  52 gggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaactaggtgtacatattacctccttttcc---tcataattc 148  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||   ||||||||||| ||||   |||| ||||    
T  40125498 gggaggaacaaaacaccagttaccaaaagaagttggtgagagcaaattcaattccaacaaactaggggt---tattacctcctcttcctgatcattattc 40125402  T
Q  149 tttccaaaatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggcactaatggagaggacacttcaacattgtttctgcttgata 248  Q
    |||||||||||||||||||||||||| ||||||||||   || ||||||| ||||| ||| ||||||||| ||||||||||||| ||| | || |||  |    
T  40125401 tttccaaaatattcagcttgaaagtactgataccagc---tattagtagtactcactggctctaatggaggggacacttcaacagtgtctttgtttgtga 40125305  T
Q  249 gatttttcattggaagagaagg 270  Q
      |||||||||||||| |||||    
T  40125304 agtttttcattggaagggaagg 40125283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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