View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18547_high_5 (Length: 231)
Name: NF18547_high_5
Description: NF18547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18547_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 21 - 231
Target Start/End: Complemental strand, 8174121 - 8173912
Alignment:
| Q |
21 |
atactgaagcccaagtggaacaaacggtttgatctgtcatcatatgataattaattgctattaaatttttgagtaaaaggggcataatagatggtaccnn |
120 |
Q |
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| T |
8174121 |
atactgaagcccaagtggaacaaacggtttgatctgtcatcatatgataattaattgctattaaatttttgagtaaaaggggcataatagatggtacc-- |
8174024 |
T |
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| Q |
121 |
nnnnnnnnngggccatgatgg-nnnnnnntgtttctttctagcttacataagaagaaattttttagtggacctagatttaagaacatgctaaaaacttgc |
219 |
Q |
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| T |
8174023 |
aaaaaaaaagggccatgatggaaaaaaaatgtttctttctagcttacataagaagaaattttatagtggacctagatttaagaacatgctaaaaacttgc |
8173924 |
T |
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| Q |
220 |
atattcgaatgc |
231 |
Q |
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|||||||||||| |
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| T |
8173923 |
atattcgaatgc |
8173912 |
T |
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