View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18547_low_1 (Length: 783)
Name: NF18547_low_1
Description: NF18547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18547_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 605; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 110 - 774
Target Start/End: Original strand, 7032988 - 7033652
Alignment:
| Q |
110 |
gaatcactatttattattgttgttgttgatgctgttgttgtttcgtaatgaatttagtttttgattaccttcaatttctctgtaaccctaattaagccca |
209 |
Q |
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| T |
7032988 |
gaatcattatttattattgttgttgttgatgctgttgttgtttcgtaatgaatttagtttttgattaccttcaatttctctgtaaccctaattaagccca |
7033087 |
T |
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| Q |
210 |
tttgaaattgcttctaactcacaggtcagaatcgtttccgagacaatgaaacgaaaatataacgatgatgtgaaacaagatcgcctcagtgacttgcctg |
309 |
Q |
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| T |
7033088 |
tttgaaattgcttctaactcacaggtcagaatcatttccgagacaatgaaacgaaaatataacgatgatgtgaaacaagatcgcctcagtgacttgcctg |
7033187 |
T |
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| Q |
310 |
attctgttgtacttcacattctctcatttttcaacaccaaagaggcagtacagacttgtatactttccaatgaatggaagaatttatggaagtttgttac |
409 |
Q |
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| T |
7033188 |
attctgttgtacttcacattctctcatttttcaacaccaaagaggcagcacaaacttgtatactttccaaaagatggaagaatttatggaagtttgttac |
7033287 |
T |
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| Q |
410 |
tacccataaattaggtactagacacttggagactatccatccattcgccaaatttgtgtctcttgttttgtctcatcgcgatgactcaaccgcactgcag |
509 |
Q |
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| T |
7033288 |
tacccttaaattaagtactagacactttgagactatccatcctttcaccaaatttgtgtctcatgttttgtctcatcgcgatgactcaaccgcactgcag |
7033387 |
T |
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| Q |
510 |
gcccttgattttcatcgcgcgagtattgtggaggcttacctactaaaaaagattgtaaaatatgctgtttcacacagtgtccaacagttacaaatcagcg |
609 |
Q |
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| T |
7033388 |
gcccttgattctcatcgcgcgagtattgtggaggcttacctactaaaaaagattgtaaaatatgctgtttcacacagtgtccaacagttacaaatcagcg |
7033487 |
T |
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| Q |
610 |
ttgatgctgattttcaacgctttcctccatgcttcttttcatgtaacactttaacttctcttaaactttcccttggctttaatacattatttccaaattt |
709 |
Q |
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| T |
7033488 |
ttgatgctgattttcaatgctttcctccatgcttcttttcatgtaacactttaacttctcttaaactttcccttggctttaatacattatttccaaattt |
7033587 |
T |
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| Q |
710 |
tctaaatttgccggcattaaccagcttgtctcttcgtagctttgtctttcataatagtgatgatg |
774 |
Q |
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| T |
7033588 |
tctaaatttgccggcattaaccagcttgtctcttcgtagctttgtctttcataatagtgatgatg |
7033652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 7032881 - 7032951
Alignment:
| Q |
1 |
tctagctcatcttcttctctgtctccatttctgcgtcctccacagctacaaaccctaacaatactgtaagtt |
72 |
Q |
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| T |
7032881 |
tctagctcatcttct-ctctgtctccatttctgcgtcctccacagctacaaaccctaacaatactgtaagtt |
7032951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 555 - 605
Target Start/End: Original strand, 13492181 - 13492231
Alignment:
| Q |
555 |
aaaaagattgtaaaatatgctgtttcacacagtgtccaacagttacaaatc |
605 |
Q |
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| T |
13492181 |
aaaaggattttaaaatatgcagtttcgcacaatgtccaacagttacaaatc |
13492231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 7175156 - 7175106
Alignment:
| Q |
629 |
ctttcctccatgcttcttttcatgtaacactttaacttctcttaaactttc |
679 |
Q |
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| T |
7175156 |
ctttccgccaagcttcttttcatgtcacactttaacatctcttaacctttc |
7175106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 502
Target Start/End: Complemental strand, 27701848 - 27701803
Alignment:
| Q |
457 |
ccaaatttgtgtctcttgttttgtctcatcgcgatgactcaaccgc |
502 |
Q |
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| T |
27701848 |
ccaaattcgtgtctcgggttttgtctcttcgcgatgactcaaccgc |
27701803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 585
Target Start/End: Original strand, 32413847 - 32413888
Alignment:
| Q |
544 |
cttacctactaaaaaagattgtaaaatatgctgtttcacaca |
585 |
Q |
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| T |
32413847 |
cttacctactcaaaaaaattgtaaaatatgctgtttcgcaca |
32413888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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