View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18547_low_3 (Length: 311)

Name: NF18547_low_3
Description: NF18547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18547_low_3
NF18547_low_3
[»] chr4 (3 HSPs)
chr4 (52-306)||(40121595-40121846)
chr4 (52-270)||(40092811-40093026)
chr4 (52-270)||(40125283-40125498)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 52 - 306
Target Start/End: Complemental strand, 40121846 - 40121595
Alignment:
Q  52 gggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaactaggtgtacatattacctccttttcctcataattcttt 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  40121846 gggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaactaggtgt---tattacctccttttcctcataattcttt 40121750  T
Q  152 ccaaaatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggcactaatggagaggacacttcaacattgtttctgcttgatagat 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40121749 ccaaaatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggcactaatggagaggacacttcaacattgtctctgcttgatagat 40121650  T
Q  252 ttttcattggaagagaaggaacaatgttcttagcagtggtatggtctgtgctgct 306  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  40121649 ttttcattggaagagaaggaacaatattcttagcagtggtatggtctgtggtgct 40121595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 52 - 270
Target Start/End: Complemental strand, 40093026 - 40092811
Alignment:
Q  52 gggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaactaggtgtacatattacctccttttcc---tcataattc 148  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||   ||||||||||| ||||   |||| ||||    
T  40093026 gggaggaacaaaacaccagttaccaaaagaagttggtgagagcaaattcaattccaacaaactaggggt---tattacctcctcttcctgatcattattc 40092930  T
Q  149 tttccaaaatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggcactaatggagaggacacttcaacattgtttctgcttgata 248  Q
    |||||||||||||||||||||||||| ||||||||||   || ||||||| ||||| ||| ||||||||| ||||||||||||| ||| | || |||  |    
T  40092929 tttccaaaatattcagcttgaaagtactgataccagc---tattagtagtactcactggctctaatggaggggacacttcaacactgtctttgtttgtga 40092833  T
Q  249 gatttttcattggaagagaagg 270  Q
      |||||||||||||| |||||    
T  40092832 agtttttcattggaagggaagg 40092811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 52 - 270
Target Start/End: Complemental strand, 40125498 - 40125283
Alignment:
Q  52 gggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaactaggtgtacatattacctccttttcc---tcataattc 148  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||   ||||||||||| ||||   |||| ||||    
T  40125498 gggaggaacaaaacaccagttaccaaaagaagttggtgagagcaaattcaattccaacaaactaggggt---tattacctcctcttcctgatcattattc 40125402  T
Q  149 tttccaaaatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggcactaatggagaggacacttcaacattgtttctgcttgata 248  Q
    |||||||||||||||||||||||||| ||||||||||   || ||||||| ||||| ||| ||||||||| ||||||||||||| ||| | || |||  |    
T  40125401 tttccaaaatattcagcttgaaagtactgataccagc---tattagtagtactcactggctctaatggaggggacacttcaacagtgtctttgtttgtga 40125305  T
Q  249 gatttttcattggaagagaagg 270  Q
      |||||||||||||| |||||    
T  40125304 agtttttcattggaagggaagg 40125283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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