View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18548_low_1 (Length: 872)
Name: NF18548_low_1
Description: NF18548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18548_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 768; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 768; E-Value: 0
Query Start/End: Original strand, 13 - 856
Target Start/End: Original strand, 13652743 - 13653587
Alignment:
| Q |
13 |
aaaatggaccataacgttttagacaaagttttacaactaacccaagcatcacttaaaggcaatgcagtaatactcaacacatttgaagatctagagtccc |
112 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13652743 |
aaaatggaccatatcattttagacaaagttttacaactaacccaagcatcacttaaaggcaatgcagtaatactcaacacatttgaagatttagagtccc |
13652842 |
T |
|
| Q |
113 |
caattctctcccaaattcgtctccacttccccaaactctacactattggcccacttcaccaccacctcaataccatgnnnnnnncaacatcatcatcttt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13652843 |
caattctctcccaaattcgtctccacttccccaaactctacactattggcccacttcaccaccacctcaataccatgaaaaaaacaacatcatcatcttt |
13652942 |
T |
|
| Q |
213 |
caactccaatttcttcaaagtggatagaacctgcatgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaaca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13652943 |
caactccaatttcttcaaagtggatagaacctgcatgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaaca |
13653042 |
T |
|
| Q |
313 |
atgacgagagaagaaatacttgagttttggcacggtttgttaaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaacac |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13653043 |
atgacgagagaagaaatacttgagttttggcacggtttgttgaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaagac |
13653142 |
T |
|
| Q |
413 |
taataaaagaacttaaggaaaggactactaaggagagaggtttgattgtggagtgggctccacaagaggaagttttgtcacatgaggcaattggtgcttt |
512 |
Q |
| |
|
|||||||||||||| ||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13653143 |
taataaaagaacttgaggaagggactagtaaggagaaaggtttgattgtggagtgggctccacaagaggaagttttgtcacataaggcaattggtgcttt |
13653242 |
T |
|
| Q |
513 |
tttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgatatgttggccttatttttctgatcaaccgcttaatagtagg |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13653243 |
tttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgatttgttggccttatttttctgatcaaccgcttaatagtagg |
13653342 |
T |
|
| Q |
613 |
tttgtgagtgaggtttggaagcttggattggatatgaaagatgtttgtgataggaatgttgttgagaatatggtgaatgatattatggtgaacaagaagg |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13653343 |
tttgtgagtgaggtttggaagcttggattggatatgaaagatgtttgtgataggaatgttgttgagaatatggtgaatgatattatggtgaacaagaagg |
13653442 |
T |
|
| Q |
713 |
aggagttttcaaaatctgctactaaaatggcggatttggcttccaagagtgtaaatcctgatggttcctcctacaacaacctccaagatttgattcacta |
812 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13653443 |
aggagttttcaaaatctgctactaaaatggcggatttggcttccaagagtgtaaatcctgatggttcctcctacaacaacctccaagatttgattcagta |
13653542 |
T |
|
| Q |
813 |
tataaggtctactagcccat-aaatatggggtgtcccctacaatt |
856 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13653543 |
tataaggtctactagcccataaaatatggggtgtcccctacaatt |
13653587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 60 - 834
Target Start/End: Original strand, 13658254 - 13659037
Alignment:
| Q |
60 |
atcacttaaaggcaatgcagtaatactcaacacatttgaagatctagagtccccaattctctcccaaattcgtctccacttccccaaactctacactatt |
159 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| || || ||||||| |||||| |||||| ||||||||||| || ||| ||||||||||| ||| |
|
|
| T |
13658254 |
atcacttaaaggcaatgcactaatactcaacacgttcgagaatctagaatccccagctctctctcaaattcgtcttcatgcccctaaactctacaccatt |
13658353 |
T |
|
| Q |
160 |
ggcccacttcaccaccacctcaataccatgnnnnnnncaacatcatcatctttcaactcc---------aatttcttcaaagtggatagaacctgcatga |
250 |
Q |
| |
|
||||| ||||||||||||||||| |||| || |||| ||||| | | |||| ||||||||| ||||||||||||| ||||||| |
|
|
| T |
13658354 |
ggccctcttcaccaccacctcaacaccacaaaaaaaacatcatcgtcatcgtcctcctcctccaagagcaatttcttcgaagtggatagaacttgcatga |
13658453 |
T |
|
| Q |
251 |
catggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacgagagaagaaatacttgagttttggcacggttt |
350 |
Q |
| |
|
||||||| ||||||||||||||||| || |||||||||||||||||||| |||| ||| |||||| | |||||||||| ||||| ||||||||||||| |
|
|
| T |
13658454 |
catggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaatgaagggagaagaaatcattgagatttggcacggttt |
13658553 |
T |
|
| Q |
351 |
gttaaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaacactaataaaagaacttaaggaaaggactactaaggagaga |
450 |
Q |
| |
|
|| || ||||||||| |||| |||||||||||||| ||||||||||||||||||||| |||| | || || ||| ||||| |||||||||| |||| | |
|
|
| T |
13658554 |
attgaatagcaaaaaaccatttttgtgggtgattaggccaaacatggtacaagaaaaaggactattgaaggagcttgaggaagggactactaaagagaaa |
13658653 |
T |
|
| Q |
451 |
ggtttgattgtggagtgggctccacaagaggaagttttgtcacatgaggcaattggtgcttttttgacacatagtggatggaattctactttggagagtg |
550 |
Q |
| |
|
|| ||||||||| ||||| |||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13658654 |
gggatgattgtggggtgggttccacaagaggaagttttgtcacacaaagcaattggtgcctttttgacacatagtggatggaattctactttggagagtg |
13658753 |
T |
|
| Q |
551 |
tggtttgtggtgtgcctatgatatgttggccttatttttctgatcaaccgcttaatagtaggtttgtgagtgaggtttggaagcttggattggatatgaa |
650 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
13658754 |
tggtttgtggtgtgcctatgatatgttggccttattttgctgatcaacaaattaatagtaggtttgtgagtgatgtttggaaacttgggttggatatgaa |
13658853 |
T |
|
| Q |
651 |
agatgtttgtgataggaatgttgttgagaatatggtgaatgatattatggtgaacaagaaggaggagttttcaaaatctgctactaaaatggcggatttg |
750 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||| |||||||||| | ||||||||||||| | ||| || | | || || | ||| |
|
|
| T |
13658854 |
agatgtttgtgataggaaggttgtggagaatatggtgaatgatgttatggtgaataggaaggaggagtttgttagatcagcaatggatatagctaagttg |
13658953 |
T |
|
| Q |
751 |
gcttccaagagtgtaaatcctgatggttcctcctacaacaacctccaagatttgattcactatataaggtctactagcccataa |
834 |
Q |
| |
|
|| ||||||||||| | ||||| ||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
13658954 |
gcatccaagagtgtgagtcctggtggttcctcctacaacaacttccaagatttaattcaatatataaggtctactagcccataa |
13659037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 60 - 835
Target Start/End: Original strand, 13647726 - 13648510
Alignment:
| Q |
60 |
atcacttaaaggcaatgcagtaatactcaacacatttgaagatctagagtccccaattctctcccaaattcgtctccacttccccaaactctacactatt |
159 |
Q |
| |
|
||||||||||| |||||| | ||||||||||||||||| |||||||| || || | ||||||||||||||| | |||||||| ||||||||||| || |
|
|
| T |
13647726 |
atcacttaaagcaaatgcattcatactcaacacatttgaggatctagaagcctcagtcctctcccaaattcgtattcacttccctaaactctacaccata |
13647825 |
T |
|
| Q |
160 |
ggcccacttcaccaccacctcaataccatgnnnnnnncaacat---catcatctttcaactc------caatttcttcaaagtggatagaacctgcatga |
250 |
Q |
| |
|
||||| |||||||||| ||||||||| | || ||| |||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13647826 |
ggccctcttcaccacctcctcaatacaaccaaaaaatcatcatttccatcatcttttttctctaagagcaatttcttcaaagtggatagaacctgcatgg |
13647925 |
T |
|
| Q |
251 |
catggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacgagagaagaaatacttgagttttggcacggttt |
350 |
Q |
| |
|
| ||||| || |||||||| ||||| |||||| |||||||||||||||||||||| ||| |||||| ||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
13647926 |
cgtggcttgactctcaaccattgaaatcagttatatatgttagctttggaagcactacaccaatgaagagagaagaaataattgagatttggcatggttt |
13648025 |
T |
|
| Q |
351 |
gttaaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaacactaataaaagaacttaaggaaaggactactaaggagaga |
450 |
Q |
| |
|
|| || ||||||||| || || ||||||||||| ||||||||||||||||||||| | || ||| || ||| ||||| ||||| |||||| | | |
|
|
| T |
13648026 |
attgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggattattaagtgagcttgaggaagggactcgtaaggaaaaa |
13648125 |
T |
|
| Q |
451 |
ggtttgattgtggagtgggctccacaagaggaagttttgtcacatgaggcaattggtgcttttttgacacatagtggatggaattctactttggagagtg |
550 |
Q |
| |
|
||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| |||||||| |||| |
|
|
| T |
13648126 |
ggtttgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgcttttttgacacataatgggtggaattcaactttggaaagtg |
13648225 |
T |
|
| Q |
551 |
tggtttgtggtgtgcctatgatatgttggccttatttttctgatcaaccgcttaatagtaggtttgtgagtgaggtttggaagcttggattggatatgaa |
650 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
13648226 |
tggtttgtggtgtgcctatgatatgttggccttattttgctgatcaacaaattaatagtaggtttgtgagtgatgtttggaaacttgggttggatatgaa |
13648325 |
T |
|
| Q |
651 |
agatgtttgtgataggaatgttgttgagaatatggtgaatgatattatggtgaacaagaaggaggagttttcaaaatctgctactaaaatggcggatttg |
750 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||| |||||||||| | ||||||||||||| | ||| || | | || || | ||| |
|
|
| T |
13648326 |
agatgtttgtgataggaaggttgtggagaatatggtgaatgatgttatggtgaataggaaggaggagtttgttagatcagcaatggatatagctaagttg |
13648425 |
T |
|
| Q |
751 |
gcttccaagagtgtaaatcctgatggttcctcctacaacaacctccaagatttgattcactatataaggtctactagcccataaa |
835 |
Q |
| |
|
|| ||||||||||| | ||||| ||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
13648426 |
gcatccaagagtgtgagtcctggtggttcctcctacaacaacttccaagatttaattcaatatataaggtctactagcccgtaaa |
13648510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 471 - 598
Target Start/End: Complemental strand, 26672242 - 26672115
Alignment:
| Q |
471 |
tccacaagaggaagttttgtcacatgaggcaattggtgcttttttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatg |
570 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| | ||||||||||||| ||| |||||||| || ||||| ||||| | ||||||| || ||| |
|
|
| T |
26672242 |
tccacaagaggaagttttgggacattcatcaattggagggtttttgacacataatggttggaattcaacgttggaaagtgtttgtggtggtgttccaatg |
26672143 |
T |
|
| Q |
571 |
atatgttggccttatttttctgatcaac |
598 |
Q |
| |
|
||||||||||||| |||| |||| |||| |
|
|
| T |
26672142 |
atatgttggcctttttttgctgaacaac |
26672115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 471 - 598
Target Start/End: Complemental strand, 26943840 - 26943713
Alignment:
| Q |
471 |
tccacaagaggaagttttgtcacatgaggcaattggtgcttttttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatg |
570 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| | ||||||||||||| ||| |||||||| || ||||| ||||| | ||||||| || ||| |
|
|
| T |
26943840 |
tccacaagaggaagttttgggacattcatcaattggagggtttttgacacataatggttggaattcaacgttggaaagtgtttgtggtggtgttccaatg |
26943741 |
T |
|
| Q |
571 |
atatgttggccttatttttctgatcaac |
598 |
Q |
| |
|
||||||||||||| |||| |||| |||| |
|
|
| T |
26943740 |
atatgttggcctttttttgctgaacaac |
26943713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 598
Target Start/End: Complemental strand, 26901488 - 26901401
Alignment:
| Q |
511 |
tttttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgatatgttggccttatttttctgatcaac |
598 |
Q |
| |
|
||||||||||||||||| |||||||| || || || ||||| | ||||||| || |||||||||||||||| |||| |||| |||| |
|
|
| T |
26901488 |
tttttgacacatagtggttggaattcaacgttagaaagtgtttgtggtggtgttccaatgatatgttggcctttttttgctgaacaac |
26901401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 487 - 536
Target Start/End: Complemental strand, 20156911 - 20156862
Alignment:
| Q |
487 |
ttgtcacatgaggcaattggtgcttttttgacacatagtggatggaattc |
536 |
Q |
| |
|
||||||||| | ||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
20156911 |
ttgtcacataaagcaataggtgcatttttgacacattgtggatggaattc |
20156862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 500 - 572
Target Start/End: Complemental strand, 894534 - 894462
Alignment:
| Q |
500 |
caattggtgcttttttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgat |
572 |
Q |
| |
|
||||||||| |||||||| ||| |||| ||| ||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
894534 |
caattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgat |
894462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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