View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18548_low_4 (Length: 284)
Name: NF18548_low_4
Description: NF18548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18548_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 26847734 - 26847486
Alignment:
| Q |
19 |
aaaatgcaacaaatgtaatcatgaaaaatccctattaatcttagagtttggtgctaattgtctttaaaattggattccaattcatgttgtactctataca |
118 |
Q |
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| T |
26847734 |
aaaatgcaacaaatgtaatcatgaaaaatccctattaatcttagagtttggtgctaattgtctttaaaattggattccaattcatgttgtactctataca |
26847635 |
T |
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| Q |
119 |
gtaacttgatttctacagttggagtttgactcacctcttgtagattttacatcaagttttatttccataagtcctaacttaagctgacaaaaatgctcaa |
218 |
Q |
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| T |
26847634 |
gtaacttgatttctacatttggagtttgactcacctcttgtagattttacatcaagttttatttccataagtcttaacttaagctgacaaaaatgctcaa |
26847535 |
T |
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| Q |
219 |
gttataaggtcggacattgttgctgggatttaaactctgattcctccac |
267 |
Q |
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| T |
26847534 |
gttataaggtcggacattgttgctgggatttaaactctgattcctccac |
26847486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 27672476 - 27672542
Alignment:
| Q |
113 |
tatacagtaacttgatttctacagttggagtttgactcacctcttgtagattttacatcaagtttta |
179 |
Q |
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| T |
27672476 |
tatacagtaacttgatatctatatttggagtttgatttatctcttgtagattcttcattaagtttta |
27672542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 27667273 - 27667321
Alignment:
| Q |
118 |
agtaacttgatttctacagttggagtttgactcacctcttgtagatttt |
166 |
Q |
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| T |
27667273 |
agtaacttgatgtctatatttggagtttgactcacctcatgtaaatttt |
27667321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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