View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18548_low_5 (Length: 282)
Name: NF18548_low_5
Description: NF18548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18548_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 62 - 269
Target Start/End: Complemental strand, 28466792 - 28466585
Alignment:
| Q |
62 |
cacaccataccttgtgtcgtcattggcattgttgctgtcttctgtcacccttggatgatattcttcctccttctggttaatctcttccattctactgagt |
161 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28466792 |
cacaccatacctcgtgtcgtcattggcattgttgctgtcttctgtcacccttggatgatattcctcctccttctggttaatctcttccattctactgagt |
28466693 |
T |
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| Q |
162 |
ggaaaactataaattgaagacaataattataaagtatctgatggtttaaatataaagtttagagagttgcgtagacaattgggagaggatacaaatccgg |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28466692 |
ggaaaactataaattgaagacaataattataaagtatctgatggtttaaatataaagtttagagagttgcgtagacaattgggagaggatacaaatccgg |
28466593 |
T |
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| Q |
262 |
tgcatggt |
269 |
Q |
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|||||||| |
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| T |
28466592 |
tgcatggt |
28466585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 62 - 181
Target Start/End: Complemental strand, 28485195 - 28485076
Alignment:
| Q |
62 |
cacaccataccttgtgtcgtcattggcattgttgctgtcttctgtcacccttggatgatattcttcctccttctggttaatctcttccattctactgagt |
161 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| |||||||||| | |||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
28485195 |
cacaccatactgtgtgtcttcattggcattgtcgctgtcttctaccgcccttggatgatcctcctcctccttctggttaatctcttccattctactgagt |
28485096 |
T |
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| Q |
162 |
ggaaaactataaattgaaga |
181 |
Q |
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|||||||||| ||||||||| |
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| T |
28485095 |
ggaaaactatcaattgaaga |
28485076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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