View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_high_1 (Length: 914)
Name: NF18549_high_1
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 820; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 820; E-Value: 0
Query Start/End: Original strand, 1 - 897
Target Start/End: Original strand, 43034663 - 43035558
Alignment:
| Q |
1 |
gaagagagtagcatcaggcatgcaagtcacgtgccgtacccccacttgtacaacaggtttacttacttttccttcaccactcacagttgaacccatcaca |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43034663 |
gaagagagcagcatcaggcatgcaagtcacgtgccgtacccccacttgtacaacaggtttacttacttttccttcaccactcacagttgaacccatcaca |
43034762 |
T |
|
| Q |
101 |
aacccttcacccggtaaccactttgaacccaatattgcagaatcaatgcagaatttaccaccttttttcacactcactgtgccttcagcaattggttttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43034763 |
aacccttcacccggtaaccactttgaacccaatattgcagaatcaatgcagaatttaccaccttttttcacactcactgtgccttcagcaattggtattg |
43034862 |
T |
|
| Q |
201 |
cattaacaggtccattgtcagagaaaagctctatcttgtagcccaagccatcgataggacctctctctcaccatgcctcgagacgaccccatgatttcca |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
43034863 |
cattaacaggtccattgtcagagaaaagctctaccttgtagcccaagccatcgataggacctctctctcgccatgcctcgagatgaccccatgatttcca |
43034962 |
T |
|
| Q |
301 |
gctacagctactcacagtggagcctccaattgagcggagaataacccacgcgcctgcgtttgatcgtgacacccgatctgagccgggggatggaacaaat |
400 |
Q |
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||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43034963 |
gctacagctactcacagtggagcctccgatcgcgcggagaataacccacgcgcctgcgtttgatcgtgacacccgatctgagctgggggatggaacaaat |
43035062 |
T |
|
| Q |
401 |
ggtgtgatcatggatgctgcagcaacgggcgagcctgatagatcgtgaattactatcatccaaccctttctctcattcccttgtccactgttctctttca |
500 |
Q |
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| T |
43035063 |
ggtgtgatcatggatgctgcagcaacgggcgagcctgatagatcgtgaattactatcatccaaccctttctctcattcccttgtccgctgttctctttca |
43035162 |
T |
|
| Q |
501 |
cctctcaatggtcttctccatctgcttgaattattgtttgtagaatccgacgaaagaggcctgaattttcaagttggttaataaaatatnnnnnnnncat |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43035163 |
cctctcaatggtcttctccatctgcttgaattattgtttgtagaatccgacgaaagaggcctgaattttcaagttggttaataaaatat-aaaaaaacat |
43035261 |
T |
|
| Q |
601 |
ttaattgattgaagtaacaagcatgatcttctatagatagcttattaagtaacaagcatgatattctatagatagcttattataagctttggttgtagaa |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43035262 |
ttaattgattgaagtaacaagcatgatcttctatagatagcttattaagtaacaagcatgatattctatagatagcttattataagctttggttgtagaa |
43035361 |
T |
|
| Q |
701 |
acaacttacacataagtatagaagtgtttttgagtaagtgttttattaagctatgtatccaaatgcctctcgagtgtaacaacataatgaaattgttaaa |
800 |
Q |
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| T |
43035362 |
acaacttacacataagtatagaagtgtttttgagtaactgttttattaagctatgtatccaaatgcctctcgagtgtaacaacataatgaaattgttaaa |
43035461 |
T |
|
| Q |
801 |
ctgtgacaggagaatcagactcttgtattttcggtgtgccagagtatcaccaaagttgaataacaaattttcaaccgagtgattctatgatggtaat |
897 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43035462 |
ctgtgccaggagaatcagactcttgtattttcggtgtgccagagtatcaccaaagttgaataacaaattttcaaccgagtgattctatgatggtaat |
43035558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 358 - 471
Target Start/End: Complemental strand, 34193884 - 34193771
Alignment:
| Q |
358 |
gtttgatcgtgacacccgatctgagccgggggatggaacaaatggtgtgatcatggatgctgcagcaacgggcgagcctgatagatcgtgaattactatc |
457 |
Q |
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|||||||| ||| || | ||||||||| ||||| || ||||||||||||| ||| || ||||||||||| || || || || |||||||||| | |||| |
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| T |
34193884 |
gtttgatcttgatactctatctgagccaggggaagggacaaatggtgtgaccattgaggctgcagcaaccggggaacccgagagatcgtgaactgttatc |
34193785 |
T |
|
| Q |
458 |
atccaaccctttct |
471 |
Q |
| |
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|||||||||||||| |
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| T |
34193784 |
atccaaccctttct |
34193771 |
T |
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