View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_high_10 (Length: 438)
Name: NF18549_high_10
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 47887917 - 47887494
Alignment:
| Q |
1 |
agtgtagtggctatcacttcttcaactgctatatccatttctctctttgtttcaaaatatcttcaaaatttttacataacaatttttgatgcatttcccc |
100 |
Q |
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| T |
47887917 |
agtgtagtggctatcacttcttcaactgctatatccatttctctctttgtttcaaaatatcttcaaaatttttacataacaatttttgatgcatttcccc |
47887818 |
T |
|
| Q |
101 |
cttatttcagaagacaacaaacacagaatgtgtttccactgacgacgaaaacatcatactaaatcctgagttcgaggatggcttgaataattggactgga |
200 |
Q |
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| T |
47887817 |
cttatttcagaagacaacaaacacaaaatgtgtttccactgacgacgaaaacatcatactaaatcctgagttcgaggatggcttgaataattggactgga |
47887718 |
T |
|
| Q |
201 |
agaggctgcaagattgcagtacatgagtccatggcaaatgggaaaatccttccgaaatccgggaaattctttgcatctgcaaccgaacgcacacaaagct |
300 |
Q |
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| T |
47887717 |
agaggctgcaagattgcagtacatgaatccatggcaaatgggaaaatccttccgaaatccgggaaattctttgcatctgcaaccgaacgcacacaaagct |
47887618 |
T |
|
| Q |
301 |
ggaatggaattcagcaagaaatcactggacgagtgcagcgcaagcttgcctatgaggtcactgctttagttcggatatttgggaacaatgtcactacttc |
400 |
Q |
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| T |
47887617 |
ggaatggaattcagcaagaaatcactggacgagtgcagcgcaagcttgcctatgaggtcactgctttagttcggatatttgggaacaatgtcactacttc |
47887518 |
T |
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| Q |
401 |
tgatgtacgtgctacgttgtatgt |
424 |
Q |
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| T |
47887517 |
tgatgtacgtgctacgttgtatgt |
47887494 |
T |
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Back To:
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Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 128 - 420
Target Start/End: Original strand, 4620745 - 4621037
Alignment:
| Q |
128 |
atgtgtttccactgacgacgaaaacatcatactaaatcctgagttcgaggatggcttgaataattggactggaagaggctgcaagattgcagtacatgag |
227 |
Q |
| |
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||||||||| |||| || |||| ||||||| |||| || | || ||||||||| ||||||||||| ||||||| |||||||||||| | ||||| |
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| T |
4620745 |
atgtgtttctactggagatgaaagcatcataataaacccacaatttgaggatggcctgaataattggtctggaaggagctgcaagattgtgttgcatgat |
4620844 |
T |
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| Q |
228 |
tccatggcaaatgggaaaatccttccgaaatccgggaaattctttgcatctgcaaccgaacgcacacaaagctggaatggaattcagcaagaaatcactg |
327 |
Q |
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||||||||| |||| ||||| |||| || || ||||||| ||||||| ||||| ||||| ||||| |||||||||||||||||| || || |||| |
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| T |
4620845 |
tccatggcagatggtaaaattgttccaaagtctgggaaatattttgcatgcgcaacagaacgaacacagttctggaatggaattcagcaggagataactg |
4620944 |
T |
|
| Q |
328 |
gacgagtgcagcgcaagcttgcctatgaggtcactgctttagttcggatatttgggaacaatgtcactacttctgatgtacgtgctacgttgt |
420 |
Q |
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|||| |||||||||||| | ||||||||| |||||||||||||||| |||| ||| ||||||||||||| | | |||||||| ||||| |||| |
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| T |
4620945 |
gacgtgtgcagcgcaagttggcctatgagatcactgctttagttcgaatatatggcaacaatgtcactaatgccgatgtacgagctactttgt |
4621037 |
T |
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