View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18549_high_13 (Length: 406)
Name: NF18549_high_13
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 178 - 395
Target Start/End: Complemental strand, 5661838 - 5661621
Alignment:
| Q |
178 |
aaaacaaactatcaaattgttcactgacgcatcgtctttttgcatgccacataaatctatttttgtcacctcacttaacttctgagctgtcctgttacaa |
277 |
Q |
| |
|
|||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| || ||||||| ||||| |
|
|
| T |
5661838 |
aaaacagactatcaaattattcactgacacattgtctttttgcatgccacataactctatttttgtcacctcatttaacttctaagttgtcctgctacaa |
5661739 |
T |
|
| Q |
278 |
cctctgatcttcattctcttgttaagctttcaatgcattgcacaaattaaaggcaatggtttcataagttacaaaaatctattataatataatagcggaa |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5661738 |
cctctgatcttcattctcttgttaagctttcaatgcattgcacaaattaaaggcaatggtttcataagttacaaaaatctattataatataatagcgaaa |
5661639 |
T |
|
| Q |
378 |
agacgaacgctgatgatg |
395 |
Q |
| |
|
||| | || ||||||||| |
|
|
| T |
5661638 |
agatggacactgatgatg |
5661621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 5661891 - 5661859
Alignment:
| Q |
119 |
tcagcccaaaagatctgaaagggacatttcgtt |
151 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
5661891 |
tcagcccaaaagatctaaaagggacatttcgtt |
5661859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 12781015 - 12780979
Alignment:
| Q |
332 |
aatggtttcataagttacaaaaatctattataatata |
368 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12781015 |
aatggtttcatcggttacaaaaatctattataatata |
12780979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 12785195 - 12785159
Alignment:
| Q |
332 |
aatggtttcataagttacaaaaatctattataatata |
368 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12785195 |
aatggtttcatcggttacaaaaatctattataatata |
12785159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University