View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18549_high_15 (Length: 378)

Name: NF18549_high_15
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18549_high_15
NF18549_high_15
[»] chr7 (16 HSPs)
chr7 (17-229)||(9280983-9281194)
chr7 (17-229)||(9291954-9292165)
chr7 (275-355)||(9280838-9280918)
chr7 (275-355)||(9291809-9291889)
chr7 (295-355)||(9266085-9266145)
chr7 (105-204)||(9266146-9266246)
chr7 (17-222)||(28517140-28517350)
chr7 (17-99)||(19277337-19277420)
chr7 (17-120)||(21326797-21326901)
chr7 (285-347)||(9233077-9233139)
chr7 (17-179)||(4501302-4501467)
chr7 (15-93)||(982991-983070)
chr7 (18-73)||(22198031-22198086)
chr7 (18-73)||(22239735-22239790)
chr7 (17-179)||(32584645-32584810)
chr7 (17-57)||(24527633-24527673)
[»] chr5 (13 HSPs)
chr5 (17-222)||(13166763-13166973)
chr5 (17-205)||(35310492-35310684)
chr5 (15-103)||(32269773-32269862)
chr5 (17-222)||(27336737-27336947)
chr5 (17-73)||(35456000-35456056)
chr5 (17-120)||(37873597-37873701)
chr5 (17-151)||(3114091-3114226)
chr5 (17-71)||(14423722-14423776)
chr5 (17-222)||(33691908-33692118)
chr5 (162-222)||(43129726-43129787)
chr5 (17-57)||(430646-430686)
chr5 (17-100)||(25663011-25663095)
chr5 (17-73)||(34335381-34335437)
[»] chr6 (9 HSPs)
chr6 (285-343)||(28597414-28597472)
chr6 (17-179)||(33220609-33220774)
chr6 (17-120)||(17249264-17249368)
chr6 (15-108)||(24016379-24016473)
chr6 (17-100)||(34304540-34304624)
chr6 (17-93)||(34415480-34415557)
chr6 (17-120)||(45636-45740)
chr6 (44-152)||(28008914-28009023)
chr6 (17-57)||(29338102-29338142)
[»] chr4 (9 HSPs)
chr4 (17-154)||(55933387-55933525)
chr4 (17-179)||(53619630-53619795)
chr4 (17-179)||(31847131-31847296)
chr4 (19-113)||(132431-132526)
chr4 (18-120)||(600651-600754)
chr4 (26-108)||(30940710-30940793)
chr4 (24-106)||(56462080-56462162)
chr4 (163-222)||(18534593-18534654)
chr4 (17-73)||(23255748-23255804)
[»] chr2 (6 HSPs)
chr2 (17-120)||(4413025-4413129)
chr2 (17-73)||(9685422-9685478)
chr2 (17-74)||(19161789-19161846)
chr2 (17-93)||(41867894-41867971)
chr2 (17-126)||(28225044-28225154)
chr2 (17-57)||(23484961-23485001)
[»] chr1 (10 HSPs)
chr1 (24-221)||(25375687-25375889)
chr1 (25-120)||(50161376-50161472)
chr1 (25-100)||(19035499-19035575)
chr1 (25-104)||(50314599-50314679)
chr1 (17-179)||(34644610-34644775)
chr1 (17-73)||(21473047-21473103)
chr1 (17-73)||(28041134-28041190)
chr1 (17-57)||(29169816-29169856)
chr1 (13-57)||(45057664-45057708)
chr1 (17-57)||(45659671-45659711)
[»] chr3 (13 HSPs)
chr3 (17-179)||(7900902-7901067)
chr3 (25-73)||(3443319-3443367)
chr3 (25-73)||(49018015-49018063)
chr3 (17-73)||(52741519-52741575)
chr3 (19-179)||(13582555-13582718)
chr3 (162-222)||(29861989-29862051)
chr3 (163-205)||(54508256-54508298)
chr3 (19-111)||(37132967-37133060)
chr3 (24-100)||(39583208-39583285)
chr3 (17-57)||(26772802-26772842)
chr3 (17-73)||(38670887-38670943)
chr3 (17-73)||(44198811-44198867)
chr3 (17-57)||(53785753-53785793)
[»] chr8 (5 HSPs)
chr8 (17-100)||(24125072-24125156)
chr8 (17-179)||(39434711-39434876)
chr8 (17-73)||(38815338-38815394)
chr8 (17-90)||(3188013-3188087)
chr8 (25-120)||(500279-500375)
[»] scaffold0490 (1 HSPs)
scaffold0490 (17-120)||(6378-6482)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 9281194 - 9280983
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttgctagtttgcttgatgcagctgttagggttgtctgttctactgt 116  Q
    ||||| |||||| ||||||||||||| ||||||||||||||  |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  9281194 tcaaatccaaatagtataaaagcatgttgattgttagaacacgctttctcatgtttgctagtttgcttgatgcagcttttagggttgtctgtcctactgt 9281095  T
Q  117 aaaaaccctatcccataatcccacgagtgatgaaacccggtcaaatcacacatgcatgttttcttgtacccatccgtatatcataacattgcatgcctaa 216  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9281094 aaaaaccctatcacataatcccacgagtgaagaaacccggtcaaatcacacatgcatgttttcttgtacccatccgtatatcataacattgcatgcctaa 9280995  T
Q  217 gtgtcgtataaat 229  Q
    |||| ||||||||    
T  9280994 gtgt-gtataaat 9280983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 9292165 - 9291954
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttgctagtttgcttgatgcagctgttagggttgtctgttctactgt 116  Q
    ||||| |||||| ||||||||||||| ||||||||||||||  |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  9292165 tcaaatccaaatagtataaaagcatgttgattgttagaacacgctttctcatgtttgctagtttgcttgatgcagcttttagggttgtctgtcctactgt 9292066  T
Q  117 aaaaaccctatcccataatcccacgagtgatgaaacccggtcaaatcacacatgcatgttttcttgtacccatccgtatatcataacattgcatgcctaa 216  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292065 aaaaaccctatcacataatcccacgagtgaagaaacccggtcaaatcacacatgcatgttttcttgtacccatccgtatatcataacattgcatgcctaa 9291966  T
Q  217 gtgtcgtataaat 229  Q
    |||| ||||||||    
T  9291965 gtgt-gtataaat 9291954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 9280918 - 9280838
Alignment:
Q  275 acagagataggactcttacgcttcaagcctttggatctgattagcagtgtgacggttgcaacgtttcttcctcttatgagt 355  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||    
T  9280918 acagagataggactcttacgcttcaagcctttggatctgattagaagtgtgacggttgcaacatttcttccttttatgagt 9280838  T

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Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 9291889 - 9291809
Alignment:
Q  275 acagagataggactcttacgcttcaagcctttggatctgattagcagtgtgacggttgcaacgtttcttcctcttatgagt 355  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||    
T  9291889 acagagataggactcttacgcttcaagcctttggatctgattagaagtgtgacggttgcaacatttcttccttttatgagt 9291809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 9266145 - 9266085
Alignment:
Q  295 cttcaagcctttggatctgattagcagtgtgacggttgcaacgtttcttcctcttatgagt 355  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9266145 cttcaagcctttggatctgattagcagtgtgacggtttcaacgtttcttcctcttatgagt 9266085  T

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Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 9266246 - 9266146
Alignment:
Q  105 ctgttctactgtaaaaaccctatcccataatcccacgagtgatgaaacccggtcaaatc-acacatgcatgttttcttgtacccatccgtatatcataac 203  Q
    |||| |||| |||||| ||||| ||| ||||||||| |||| ||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||    
T  9266246 ctgtcctacagtaaaagccctaacccctaatcccacaagtggtgaaacccggtcaaatccacacatgcatgtttccttgtacccatctgtatatcataac 9266147  T
Q  204 a 204  Q
    |    
T  9266146 a 9266146  T

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Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 28517350 - 28517140
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg-ctagtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| |||||||||||||| |||| |||||||   ||||  |||| ||||||||| | | ||||||||| |||||| |||||||||||||| ||||||    
T  28517350 tcaaaagcaaatggtataaaaacatgttgattgtctaaacacgctttctcatgtttggccactttgcttgacgcagcttttagggttgtctgtcctactg 28517251  T
Q  116 taaaaaccctatcccataatcccacgagtgatgaaa-cccggtcaaat-cacacatgcatgtttt-cttgtacccatccgtatatcataaca-ttgcatg 211  Q
    ||||| |||   ||| ||| ||||| |||| ||||| ||| ||||| | ||||||| |||||||| ||   ||||||||||| | ||||||| ||||| |    
T  28517250 taaaagcccccacccctaaacccacaagtggtgaaaccccagtcaagtccacacatacatgttttcctccaacccatccgtacaccataacatttgcagg 28517151  T
Q  212 cctaagtgtcg 222  Q
    |||||||||||    
T  28517150 cctaagtgtcg 28517140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 19277337 - 19277420
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttagg 99  Q
    |||||| ||||||||||||||||||| ||||||| ||||||  |||| |||||||| |||| ||||||||| |||||| |||||    
T  19277337 tcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggctactttgcttgacgcagcttttagg 19277420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 21326901 - 21326797
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| ||||||||||||||||||| ||||||| ||||||  |||| |||||||| || | ||||||||| || ||| |||||| ||| ||| |||| |    
T  21326901 tcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcggcttttagggctgtttgtcctacgg 21326802  T
Q  116 taaaa 120  Q
    |||||    
T  21326801 taaaa 21326797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 9233077 - 9233139
Alignment:
Q  285 gactcttacgcttcaagcctttggatctgattagcagtgtgacggttgcaacgtttcttcctc 347  Q
    ||||||||||||||||||||||| ||||||  || ||||||||| ||| |||||||| |||||    
T  9233077 gactcttacgcttcaagcctttgaatctgacgaggagtgtgacgtttggaacgtttcatcctc 9233139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 4501302 - 4501467
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| |||||  |||||||||||| ||||||| ||||||  |||| |||||||| || | |||| |||| |||||| |||||||||| ||| |||| |    
T  4501302 tcaaaagcaaattatataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgtttgacgcagcttttagggttgtttgtcctacgg 4501401  T
Q  116 taaaaaccctatcccataatcccacgagtgatgaaa-cccggtcaaatc-acacatgcatgttttc 179  Q
    |||||  ||   | | ||||||||| |||| ||||| ||| ||||| || ||||||||||||||||    
T  4501402 taaaaggcccgacacctaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttc 4501467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 982991 - 983070
Alignment:
Q  15 tatcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagct 93  Q
    |||||||| ||||||||||||||||||| ||||||| ||||||   ||| |||||||| || | ||||||||| ||||||    
T  982991 tatcaaaagcaaatggtataaaagcatgttgattgtcagaacacgatttctcatgtttggccactttgcttgacgcagct 983070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 22198031 - 22198086
Alignment:
Q  18 caaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg 73  Q
    ||||| |||||||||||||| |||| |||||||| ||||| ||||| |||||||||    
T  22198031 caaaagcaaatggtataaaaacatgttgattgttggaacacactttctcatgtttg 22198086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 22239790 - 22239735
Alignment:
Q  18 caaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg 73  Q
    ||||| |||||||||||||| |||| |||||||| ||||| ||||| |||||||||    
T  22239790 caaaagcaaatggtataaaaacatgttgattgttggaacacactttctcatgtttg 22239735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 32584645 - 32584810
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg-ctagtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| |||||||| |||||||||  ||||||| ||||||   ||| ||||||||| | | |||| ||||||||  | |||||||||  ||| |||| |    
T  32584645 tcaaaagcaaatggtgtaaaagcatcttgattgtcagaacacgttttctcatgtttgaccactttgtttgatgcaatttttagggttgcatgtcctaccg 32584744  T
Q  116 taaaaaccctatcccataatcccacgagtgatgaaacccg-gtcaaatc-acacatgcatgttttc 179  Q
    ||||| |||   ||| ||||||||| || | ||||||||| ||||| || ||||||||||||||||    
T  32584745 taaaatccccgacccctaatcccacaagaggtgaaacccgagtcaagtccacacatgcatgttttc 32584810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 24527633 - 24527673
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaaca 57  Q
    |||||| ||||||||||||||||||| ||||||| ||||||    
T  24527633 tcaaaagcaaatggtataaaagcatgttgattgtcagaaca 24527673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 13166973 - 13166763
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| ||||||||||||||||||| ||||||| ||||||  |||| |||||||| || | ||||||||| |||| | |||||||||||||| | || |    
T  13166973 tcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttagccactttgcttgacgcagattttagggttgtctgtcccaccg 13166874  T
Q  116 taaaaaccctatcccat-aatcccacgagtgatgaaacccggtcaaat-cacacatgcatgtttt-cttgtacccatccgtatatcataacat-tgcatg 211  Q
    ||||| ||||| ||||| ||  |||| |||| |||||||| ||||| | |||||||||||||||| ||   ||||||||||| | ||||||||  |||||    
T  13166873 taaaagccctaacccataaaatccacaagtggtgaaacccagtcaagtccacacatgcatgttttcctccaacccatccgtagaccataacatccgcatg 13166774  T
Q  212 cctaagtgtcg 222  Q
    | |||||||||    
T  13166773 cttaagtgtcg 13166763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 35310492 - 35310684
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| || |||||||||||||||| ||||||| ||||||  |||| |||||||| || | ||||||||| ||| || |||||||||||||| |||| |    
T  35310492 tcaaaagcagatggtataaaagcatgttgattgtcagaacatgctttctcatgtttggccactttgcttgacgcatcttttagggttgtctgtcctaccg 35310591  T
Q  116 taaaaaccctatcccataatcccacgagtgatgaaa-cccggtcaaat-cacacatgcatgtttt-cttgtacccatccgtatatcataacat 205  Q
    ||||| |||   ||| ||| ||||| |||| ||||| |||  |||| | |||||||||||||||| ||   ||||||||||| ||||||||||    
T  35310592 taaaagccccgacccctaaacccacaagtggtgaaaccccaatcaagtccacacatgcatgttttcctccaacccatccgtacatcataacat 35310684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 32269862 - 32269773
Alignment:
Q  15 tatcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg-ctagtttgcttgatgcagctgttagggttg 103  Q
    |||||||| |||||||||||||||| || ||||||| |||||| ||||| ||||||||| | | |||| ||||||||||| |||||||||    
T  32269862 tatcaaaagcaaatggtataaaagcgtgttgattgtcagaacacactttctcatgtttgaccactttggttgatgcagcttttagggttg 32269773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 27336737 - 27336947
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg-ctagtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| ||||||||||||||| ||| ||||||| ||||||   ||| ||||||||| | | ||||||||| ||| || |||||| ||||||| ||| ||    
T  27336737 tcaaaagcaaatggtataaaagtatgttgattgtcagaacacgatttctcatgtttgaccactttgcttgacgcaacttttagggctgtctgtcctattg 27336836  T
Q  116 taaaaaccctatcccataatcccacgagtgatgaaa-cccggtcaaat-cacacatgcatgtttt-cttgtacccatccgtatatcataacat-tgcatg 211  Q
    ||||| |||   ||| ||| ||||| |||| ||||| ||| ||||| | |||||||||||||||| ||   ||||||||||| | ||||||||  ||| |    
T  27336837 taaaagcccccacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctccaacccatccgtacaccataacatccgcagg 27336936  T
Q  212 cctaagtgtcg 222  Q
    |||||||||||    
T  27336937 cctaagtgtcg 27336947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 35456000 - 35456056
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg 73  Q
    |||||| |||| |||||||||||||| ||||||||||||||  |||| |||||||||    
T  35456000 tcaaaagcaaaaggtataaaagcatgttgattgttagaacacgctttctcatgtttg 35456056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 37873701 - 37873597
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| |||||||||||||| |||| ||||||| ||||||  |||| |||||||| || | ||||||||| ||| || |||| | ||||||| |||| |    
T  37873701 tcaaaagcaaatggtataaaaacatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcaacttttagagctgtctgtcctaccg 37873602  T
Q  116 taaaa 120  Q
    |||||    
T  37873601 taaaa 37873597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 3114226 - 3114091
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| |||||||||||||| |||| ||| ||| ||||||  |||| |||||||| || | |||| |||||||| || |||||| || |||| |||| |    
T  3114226 tcaaaaacaaatggtataaaaacatgttgactgtcagaacatgctttctcatgtttggccactttgtttgatgcaacttttagggctgcctgtcctaccg 3114127  T
Q  116 taaaaaccctatcccataatcccacgagtgatgaaa 151  Q
    ||||| |||   ||| |||||||| ||||| |||||    
T  3114126 taaaagccccgacccctaatcccatgagtggtgaaa 3114091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 14423722 - 14423776
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtt 71  Q
    |||||| ||||||||||||||||||| ||||||| ||||||  |||| |||||||    
T  14423722 tcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtt 14423776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 33692118 - 33691908
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg-ctagtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| ||||||||| ||||||||| ||||||| | ||||   ||| ||||||||| | | ||||||||| |||||| |||||  || |||| |||| |    
T  33692118 tcaaaagcaaatggtacaaaagcatgttgattgtcataacacgttttgtcatgtttggccactttgcttgacgcagcttttaggcctgcctgtcctaccg 33692019  T
Q  116 taaaaaccctatcccataatcccacgagtgatgaaacc-cggtcaaatc-acacatgcatgtttt-cttgtacccatccgtatatcataaca-ttgcatg 211  Q
    ||||| |||   ||| ||| ||||| |||| ||||||| | ||||| || ||||||||||||||| ||   ||||||||||| | ||||||| ||||| |    
T  33692018 taaaagccccgacccctaaacccacaagtggtgaaacctcagtcaagtccacacatgcatgttttcctccaacccatccgtacaccataacatttgcagg 33691919  T
Q  212 cctaagtgtcg 222  Q
    | |||||||||    
T  33691918 cttaagtgtcg 33691908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 43129726 - 43129787
Alignment:
Q  162 tcacacatgcatgttttcttgtacccatccgtatatcataacat-tgcatgcctaagtgtcg 222  Q
    |||||||||||| ||| ||  || ||||||||| |||||||||| |||||||||||||||||    
T  43129726 tcacacatgcatttttcctcctatccatccgtacatcataacatctgcatgcctaagtgtcg 43129787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 430646 - 430686
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaaca 57  Q
    |||||| ||||||||||||||||||| ||||||| ||||||    
T  430646 tcaaaagcaaatggtataaaagcatgttgattgtcagaaca 430686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 25663095 - 25663011
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttaggg 100  Q
    |||||| |||||||||||||| |||| ||||| | ||||||  |||| |||||||| || | |||| ||||||||||| ||||||    
T  25663095 tcaaaagcaaatggtataaaaacatgttgattatcagaacacgctttctcatgtttggccactttgtttgatgcagcttttaggg 25663011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 34335381 - 34335437
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg 73  Q
    |||||| ||||||||||||||||||| ||||||| || |||  |||| |||||||||    
T  34335381 tcaaaaacaaatggtataaaagcatgttgattgtcaggacacgctttctcatgtttg 34335437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 343
Target Start/End: Complemental strand, 28597472 - 28597414
Alignment:
Q  285 gactcttacgcttcaagcctttggatctgattagcagtgtgacggttgcaacgtttctt 343  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||    
T  28597472 gactcttacgcttcaagcctttgaatctgattagcagtgtgacggtggtaacgtttctt 28597414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 33220774 - 33220609
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| ||||||||||||||||||| ||||||| |  |||  |||| |||||||| || | |||||||||||||||| |||| | ||||||| |||| |    
T  33220774 tcaaaagcaaatggtataaaagcatgttgattgtcaacacacgctttctcatgtttggccactttgcttgatgcagcttttagagctgtctgtcctaccg 33220675  T
Q  116 taaaaaccctatcccataatcccacgagtgatgaaa-cccggtcaaa-tcacacatgcatgttttc 179  Q
    ||||| |||   ||| ||| ||||| |||| ||||| ||| |||||| ||||||||||||||||||    
T  33220674 taaaagccccgacccctaaacccacaagtggtgaaaccccagtcaaattcacacatgcatgttttc 33220609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 17249368 - 17249264
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| ||||||||||||||||||| ||||||| |||||| ||||| |||||||| || | |||| |||| ||| || |||||||||| ||| |||| |    
T  17249368 tcaaaagcaaatggtataaaagcatgttgattgtcagaacacactttctcatgtttggccactttgtttgacgcaacttttagggttgtttgtcctaccg 17249269  T
Q  116 taaaa 120  Q
    |||||    
T  17249268 taaaa 17249264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 24016379 - 24016473
Alignment:
Q  15 tatcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg-ctagtttgcttgatgcagctgttagggttgtctgt 108  Q
    |||||| | |||||||||||||| |||| ||||||| ||||||| |||| ||||||||| ||| ||| ||||||||| || ||| ||||||||||    
T  24016379 tatcaatagcaaatggtataaaaacatgttgattgtgagaacaagctttctcatgtttgactattttacttgatgcaacttttacggttgtctgt 24016473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 34304540 - 34304624
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttaggg 100  Q
    |||||| ||||||||||||||||||| ||||||| ||||||  |||| |||||||| | || ||||||||| |||||| ||||||    
T  34304540 tcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggttattttgcttgacgcagcttttaggg 34304624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 34415480 - 34415557
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagct 93  Q
    |||||| ||||||| ||||||||||| ||||||| |||||| ||||| |||||||| || | ||||||||| ||||||    
T  34415480 tcaaaaacaaatggcataaaagcatgttgattgtcagaacacactttctcatgtttcgccattttgcttgacgcagct 34415557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 45740 - 45636
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttgct-agtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| ||||||| ||||||||||| ||||||| ||||||   ||| ||||||||| | | |||||||||||||||| |||| | || |||| |||| |    
T  45740 tcaaaaacaaatggaataaaagcatgttgattgtcagaacacgttttctcatgtttgatcactttgcttgatgcagcttttagagctgcctgtcctacgg 45641  T
Q  116 taaaa 120  Q
    |||||    
T  45640 taaaa 45636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 28009023 - 28008914
Alignment:
Q  44 tgattgttagaacaaactttttcatgtttgctag-tttgcttgatgcagctgttagggttgtctgttctactgtaaaaaccctatcccataatcccacga 142  Q
    ||||||||||||||| |||| |||||||||   | ||||||||| | |||| |||||||||  ||| |||| |||||| |||   ||| |||||||||||    
T  28009023 tgattgttagaacaagctttctcatgtttgaccgctttgcttgacgtagcttttagggttgcatgtcctaccgtaaaagccccgacccctaatcccacga 28008924  T
Q  143 gtgatgaaac 152  Q
    ||| ||||||    
T  28008923 gtggtgaaac 28008914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 29338142 - 29338102
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaaca 57  Q
    |||||| |||||||||||| |||||| ||||||||||||||    
T  29338142 tcaaaagcaaatggtataagagcatgttgattgttagaaca 29338102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 55933525 - 55933387
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| || | |||| |||| ||| || |||||| || |||| |||| |    
T  55933525 tcaaaagcaaatggtataaaagcatgttgattgttagaacaaactttctcatgtttggccactttgtttgacgcaacttttagggctgactgtcctaccg 55933426  T
Q  116 taaaaaccctatcccataatcccacgagtgatgaaaccc 154  Q
    ||||| ||||  ||| ||| ||||| || | ||||||||    
T  55933425 taaaagccctgacccttaaacccacaaggggtgaaaccc 55933387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 53619630 - 53619795
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| ||||||||||||||||||| ||||||| ||||||   ||| |||||||| || | ||||||||| |||||| ||||||||| |||| ||||||    
T  53619630 tcaaaaacaaatggtataaaagcatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcagcttttagggttgcctgtcctactg 53619729  T
Q  116 taaaaaccctatcccataatcccacgagtgatgaaa-cccggtcaaat-cacacatgcatgttttc 179  Q
    ||||| |||   ||  ||| ||||| |||| ||||| ||| ||||| | |||||||||||||||||    
T  53619730 taaaagcccccacctctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttc 53619795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 31847131 - 31847296
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg-ctagtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| ||||||||| |||| |||| ||| ||| ||||||   ||| ||||||||| | | ||||||||| |||||| |||||| || |||| ||||||    
T  31847131 tcaaaagcaaatggtaaaaaaacatgttgactgtcagaacatggtttctcatgtttgaccactttgcttgacgcagcttttagggctgcctgtcctactg 31847230  T
Q  116 taaaaaccctatcccataatcccacgagtgatgaaaccc-ggtcaaat-cacacatgcatgttttc 179  Q
    ||||| |||   ||| ||| ||||| |||| ||||||||  ||||| | |||||||||||||||||    
T  31847231 taaaagcccccacccctaaacccacaagtggtgaaaccctagtcaagtccacacatgcatgttttc 31847296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 132431 - 132526
Alignment:
Q  19 aaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatg-tttgctagtttgcttgatgcagctgttagggttgtctgttctac 113  Q
    |||| ||||||||||||||||||| ||||||| ||||||   ||| ||||| ||||| | ||||||||| |||||| |||||| || |||| ||||    
T  132431 aaaaacaaatggtataaaagcatgttgattgtcagaacacgatttctcatgttttgccattttgcttgacgcagcttttagggctgcctgtcctac 132526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 600754 - 600651
Alignment:
Q  18 caaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttgct-agtttgcttgatgcagctgttagggttgtctgttctactgt 116  Q
    ||||| ||||||||||||||||||| | ||||||||||||   ||| ||||||||| | | |||||||||   | || |||||||||||||| |||| ||    
T  600754 caaaagcaaatggtataaaagcatgttaattgttagaacacgttttctcatgtttggtcactttgcttgacataacttttagggttgtctgtcctacagt 600655  T
Q  117 aaaa 120  Q
    ||||    
T  600654 aaaa 600651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 30940793 - 30940710
Alignment:
Q  26 aatggtataaaagcatgctgattgttagaacaaactttttcatgtttg-ctagtttgcttgatgcagctgttagggttgtctgt 108  Q
    ||||||||||||||||| ||||||| ||||||  |||| ||||||||| | | ||| ||||| ||| || ||||||||||||||    
T  30940793 aatggtataaaagcatgttgattgtcagaacacgctttctcatgtttgaccactttacttgacgcaacttttagggttgtctgt 30940710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 56462162 - 56462080
Alignment:
Q  24 caaatggtataaaagcatgctgattgttagaacaaactttttcatgtttgctagtttgcttgatgcagctgttagggttgtct 106  Q
    |||||||||||||| |||| ||||||| ||||||  |||| |||||||||| | |||| |||| ||| || ||||||| ||||    
T  56462162 caaatggtataaaaacatgttgattgtcagaacacgctttatcatgtttgccactttgtttgacgcaacttttagggtggtct 56462080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 18534593 - 18534654
Alignment:
Q  163 cacacatgcatgttttc-ttgtacccatccgtatatcataaca-ttgcatgcctaagtgtcg 222  Q
    ||||||||||||||||| || |||||||||||||| ||||||| ||| | ||||||||||||    
T  18534593 cacacatgcatgttttccttctacccatccgtataccataacatttgtaggcctaagtgtcg 18534654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 23255748 - 23255804
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg 73  Q
    |||||| ||||||||||||||||||| | ||||| ||||||  |||| |||||||||    
T  23255748 tcaaaaacaaatggtataaaagcatgttaattgtcagaacacgctttctcatgtttg 23255804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 4413129 - 4413025
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| ||||||||||||||||||| ||||||| ||||||  |||| |||||||| || | |||||||||  ||||| ||||||||| |||| |||| |    
T  4413129 tcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacacagcttttagggttgcctgtcctacgg 4413030  T
Q  116 taaaa 120  Q
    |||||    
T  4413029 taaaa 4413025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 9685478 - 9685422
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg 73  Q
    |||||| ||||||||||||||||||| ||||||| ||||||  ||||||||||||||    
T  9685478 tcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttttcatgtttg 9685422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 19161846 - 19161789
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttgc 74  Q
    |||||| |||||||||||||| |||| ||||||| ||||||  |||||||||||||||    
T  19161846 tcaaaagcaaatggtataaaaacatgttgattgtcagaacacgctttttcatgtttgc 19161789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 41867971 - 41867894
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg-ctagtttgcttgatgcagct 93  Q
    |||||| ||||||||||||||||||| ||||||| ||||||  |||| ||||||||| | | ||||||||| ||||||    
T  41867971 tcaaaagcaaatggtataaaagcatgttgattgtcagaacatgctttctcatgtttgaccactttgcttgacgcagct 41867894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 28225044 - 28225154
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttgct-agtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| ||||||||||||||||||| ||||||| |||| |  |||| |||| |||| | | ||||||||| |||||| |||  ||||| ||| |||| |    
T  28225044 tcaaaagcaaatggtataaaagcatgttgattgtcagaatacgctttctcatatttggtcactttgcttgacgcagcttttaaagttgtttgtcctaccg 28225143  T
Q  116 taaaaacccta 126  Q
    ||||| |||||    
T  28225144 taaaagcccta 28225154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 23485001 - 23484961
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaaca 57  Q
    |||||| ||||||||||||||||||| ||||||| ||||||    
T  23485001 tcaaaaacaaatggtataaaagcatgttgattgtcagaaca 23484961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 25375889 - 25375687
Alignment:
Q  24 caaatggtataaaagcatgctgattgttagaacaaactttttcatgtttgct-agtttgcttgatgcagctgttagggttgtctgttctactgtaaaaac 122  Q
    |||||||||||||| |||| |||| || ||||||   ||| ||||||||| | | ||||||||| ||| || || | ||||||||| |||| |||||| |    
T  25375889 caaatggtataaaaacatgttgatggtaagaacatgttttgtcatgtttggtcactttgcttgacgcaacttttggagttgtctgtcctaccgtaaaagc 25375790  T
Q  123 cctatcccataatcccacgagtgatgaaaccc-ggtcaaatc-acacatgcatgttttc-ttgtacccatccgtatatcataacat-tgcatgcctaagt 218  Q
     ||  ||| |||||| ||||||  |||||||| ||||||||| || | ||||||||||| || |||||||||||||| |||||||| ||||  |||||||    
T  25375789 tctgacccctaatccgacgagtagtgaaaccctggtcaaatccacgcttgcatgttttccttctacccatccgtataccataacatctgcagacctaagt 25375690  T
Q  219 gtc 221  Q
    |||    
T  25375689 gtc 25375687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 50161472 - 50161376
Alignment:
Q  25 aaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg-ctagtttgcttgatgcagctgttagggttgtctgttctactgtaaaa 120  Q
    ||||| |||||||||||| ||||||| ||||||  |||| ||||||||| | | ||||||||| ||| || |||||||||||||| |||| ||||||    
T  50161472 aaatgatataaaagcatgttgattgtgagaacacgctttctcatgtttgtccactttgcttgacgcaacttttagggttgtctgtcctaccgtaaaa 50161376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 19035499 - 19035575
Alignment:
Q  25 aaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttaggg 100  Q
    |||||||||||||||||| ||||||| ||||||  |||| |||||||| || | ||||||||| |||||| ||||||    
T  19035499 aaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcagcttttaggg 19035575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 50314679 - 50314599
Alignment:
Q  25 aaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg-ctagtttgcttgatgcagctgttagggttgt 104  Q
    |||||||||||||||||| ||||||| |||||||  ||| ||||||||| | | ||||||| |||||||| |||| |||||    
T  50314679 aaatggtataaaagcatgttgattgtgagaacaagttttgtcatgtttgaccactttgctttatgcagctcttagagttgt 50314599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 34644610 - 34644775
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| |||||||||||||||||||  | |||| ||||||  |||| |||||||| || | |||| |||| ||| || |||||||||  ||| |||| |    
T  34644610 tcaaaaacaaatggtataaaagcatgtaggttgtcagaacacgctttctcatgtttggccactttgtttgacgcaacttttagggttgcttgtcctaccg 34644709  T
Q  116 taaaaaccctatcccataatcccacgagtgatgaaa-cccggtcaaat-cacacatgcatgttttc 179  Q
    ||||| |||   ||| ||| ||||| |||| ||||| ||| ||||| | |||||||||||||||||    
T  34644710 taaaagccccgacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttc 34644775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 21473047 - 21473103
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg 73  Q
    |||||| |||||||||||||| |||| ||||||| ||||||  |||| |||||||||    
T  21473047 tcaaaagcaaatggtataaaaacatgttgattgtcagaacacgctttctcatgtttg 21473103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 28041190 - 28041134
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg 73  Q
    |||||| |||||||||||||| | || ||||||| |||||| ||||| |||||||||    
T  28041190 tcaaaagcaaatggtataaaaacctgttgattgtcagaacacactttctcatgtttg 28041134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 29169856 - 29169816
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaaca 57  Q
    |||||| ||||||||||||||||||| ||||||| ||||||    
T  29169856 tcaaaagcaaatggtataaaagcatgttgattgtcagaaca 29169816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 45057664 - 45057708
Alignment:
Q  13 aatatcaaaaccaaatggtataaaagcatgctgattgttagaaca 57  Q
    |||||| ||| |||||| ||||||||||||| |||||||||||||    
T  45057664 aatatctaaaacaaatgttataaaagcatgccgattgttagaaca 45057708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 45659711 - 45659671
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaaca 57  Q
    |||||| ||||||||||||||||||| ||||||| ||||||    
T  45659711 tcaaaagcaaatggtataaaagcatgttgattgtcagaaca 45659671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 7900902 - 7901067
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtt-tgctagtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| ||||||||||||||||||| ||||||| |||| |  |||| |||||||  |||| ||||||||| |||| | |||||| | || || |||| |    
T  7900902 tcaaaaacaaatggtataaaagcatgttgattgtcagaaaacgctttctcatgttcggctattttgcttgacgcagtttttagggatatccgtcctaccg 7901001  T
Q  116 taaaaaccctatcccataatcccacgagtgatgaaa-cccggtcaaat-cacacatgcatgttttc 179  Q
    |||||  || | ||| ||||||||| |||| ||||| ||| ||||| | |||||||||||||||||    
T  7901002 taaaagacccaacccctaatcccacaagtggtgaaaccccagtcaagtccacacatgcatgttttc 7901067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 3443367 - 3443319
Alignment:
Q  25 aaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg 73  Q
    |||||||||||||||||| |||||||||||| | |||||||||||||||    
T  3443367 aaatggtataaaagcatgttgattgttagaatacactttttcatgtttg 3443319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 49018015 - 49018063
Alignment:
Q  25 aaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg 73  Q
    ||||||||||||| |||| |||||||||||||| ||||| |||||||||    
T  49018015 aaatggtataaaaacatgttgattgttagaacacactttctcatgtttg 49018063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 52741575 - 52741519
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg 73  Q
    |||||| ||||||||||||||||||| ||||||| ||||||  |||| |||||||||    
T  52741575 tcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttg 52741519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 13582555 - 13582718
Alignment:
Q  19 aaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttgct-agtttgcttgatgcagctgttagggttgtctgttctactgta 117  Q
    |||| |||||||||||||| || | ||||||| |||||| ||||| | ||||||| | | |||| |||| |||||| |||||| ||  ||| |||| |||    
T  13582555 aaaaacaaatggtataaaaacacgttgattgtcagaacacactttcttatgtttgatcactttgattgacgcagcttttagggctgcttgtcctacggta 13582654  T
Q  118 aaaaccctatcccataatcccacgagtgatgaaacc-cggtcaaatc-acacatgcatgttttc 179  Q
    |||  |||  | | ||||||||| |||| ||||||| ||||||| || ||||||||||||||||    
T  13582655 aaaggcctgacacctaatcccacaagtgttgaaacctcggtcaagtctacacatgcatgttttc 13582718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 29861989 - 29862051
Alignment:
Q  162 tcacacatgcatgtttt-cttgtacccatccgtatatcataacat-tgcatgcctaagtgtcg 222  Q
    ||||||||||||||||| ||  |||||||||||| | |||||||| |||||||||||||||||    
T  29861989 tcacacatgcatgttttcctcctacccatccgtacaccataacatctgcatgcctaagtgtcg 29862051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 54508298 - 54508256
Alignment:
Q  163 cacacatgcatgttttcttgtacccatccgtatatcataacat 205  Q
    ||||||||||||||||||| |||||||||||| | ||||||||    
T  54508298 cacacatgcatgttttcttctacccatccgtacaccataacat 54508256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 37133060 - 37132967
Alignment:
Q  19 aaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttagggttgtctgttct 111  Q
    |||| |||||||||||||| |||| ||||||| ||||||  |||| ||||||||  | | ||||||||| | |||| |||||| ||||||||||    
T  37133060 aaaaacaaatggtataaaaacatgttgattgtcagaacacgctttctcatgtttaaccactttgcttgacgtagcttttagggctgtctgttct 37132967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 39583285 - 39583208
Alignment:
Q  24 caaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttaggg 100  Q
    |||||| |||||||||||| ||||||| ||||||  |||| |||||||| || | ||||||||| |||||| ||||||    
T  39583285 caaatgatataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcagcttttaggg 39583208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 26772802 - 26772842
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaaca 57  Q
    |||||| ||||||||||||||||||| ||||||| ||||||    
T  26772802 tcaaaagcaaatggtataaaagcatgttgattgtcagaaca 26772842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 38670943 - 38670887
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg 73  Q
    |||||| ||||| ||||||||||||| ||||||| ||||||  |||| |||||||||    
T  38670943 tcaaaaacaaattgtataaaagcatgttgattgtcagaacacgctttctcatgtttg 38670887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 44198811 - 44198867
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg 73  Q
    |||||| ||||||||||||||||||| ||||| | ||||||  |||| |||||||||    
T  44198811 tcaaaagcaaatggtataaaagcatgttgattctcagaacacgctttctcatgtttg 44198867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 53785753 - 53785793
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaaca 57  Q
    |||||| ||||||||||||||||||| ||||||| ||||||    
T  53785753 tcaaaagcaaatggtataaaagcatgttgattgtcagaaca 53785793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 24125072 - 24125156
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttaggg 100  Q
    |||||| ||||||||||||||||||| ||||||| ||| ||  |||| |||||||| || | |||||||||||||||| ||||||    
T  24125072 tcaaaagcaaatggtataaaagcatgttgattgtcagagcacgctttctcatgtttggccattttgcttgatgcagcttttaggg 24125156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 39434711 - 39434876
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| ||||||||||||||||||| ||||||| ||||||  |||| |||||||| || | ||||||||| ||| || |||| | |  |||| ||||||    
T  39434711 tcaaaaacaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcaacttttagagcttcctgtcctactg 39434810  T
Q  116 taaaaaccctatcccataatcccacgagtgatgaaa-cccggtcaaat-cacacatgcatgttttc 179  Q
    ||||| ||    ||| ||| ||||| |||| ||||| ||| ||||| | |||||||||||||||||    
T  39434811 taaaagcctccacccctaaacccacaagtggtgaaaccccagtcaagtacacacatgcatgttttc 39434876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 38815338 - 38815394
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgtttg 73  Q
    |||||| ||||||||||||||||||| ||||||| ||||||  |||| |||||||||    
T  38815338 tcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttg 38815394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 3188013 - 3188087
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatg-tttgctagtttgcttgatgca 90  Q
    |||||| ||||||||||||||||||| ||||||| ||||||  |||  ||||| ||||| | |||||||||||||    
T  3188013 tcaaaagcaaatggtataaaagcatgttgattgtcagaacacgcttcctcatgttttgccactttgcttgatgca 3188087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 500279 - 500375
Alignment:
Q  25 aaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttagggttgtctgttctactgtaaaa 120  Q
    |||||||||||||||||| ||||||| ||||||   ||| |||||||| || | ||||||||| ||| || |||||| |||| || |||| ||||||    
T  500279 aaatggtataaaagcatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcaacttttagggctgtcggtcctaccgtaaaa 500375  T

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Target: scaffold0490 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 6378 - 6482
Alignment:
Q  17 tcaaaaccaaatggtataaaagcatgctgattgttagaacaaactttttcatgttt-gctagtttgcttgatgcagctgttagggttgtctgttctactg 115  Q
    |||||| ||||||||||| ||||||| ||||||| ||||||  |||| |||||||| || | ||| ||||| ||| || |||||| ||||||| |||| |    
T  6378 tcaaaagcaaatggtatagaagcatgttgattgtcagaacacgctttctcatgtttggccactttacttgacgcaacttttagggctgtctgtcctacgg 6477  T
Q  116 taaaa 120  Q
    |||||    
T  6478 taaaa 6482  T

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