View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_high_2 (Length: 668)
Name: NF18549_high_2
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 48 - 580
Target Start/End: Complemental strand, 7281857 - 7281325
Alignment:
| Q |
48 |
attgcacctcattttgatccaagctgcaatagtgactttagtaaaaagattagtcttatgggtaaacaatagtgacttgagataacatttaattttaacc |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7281857 |
attgcacctcattttgatccaagctgcaatagtgactttagtaaaa-gattagtcttatgggtaaacaatagtgacttgagataacatttaattttaacc |
7281759 |
T |
|
| Q |
148 |
attgtgaattgttgtcttccaaagtagaaacatcaaatgattgtataatagttcaagctaaataattataagttatagataaaaatatttt-caaataaa |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7281758 |
attgtgaattgttgtcttccaaagtagaaacatcaaatgattgtataatacttcaagctaaataattataagttatagataaaaatattttacaaataaa |
7281659 |
T |
|
| Q |
247 |
caagtttcaagttaaattcagtaaagttgcctccttggttctttccttccttccttcctaacaatgtgctcccttaccattgttattgctttgttgtcac |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7281658 |
caagtttcaagttaaattcagtaaagttgcctccttggttctttccttccttccttcctaacaatgtgctcccttaccattgttattgctttgttgtcac |
7281559 |
T |
|
| Q |
347 |
gcaacacaatttgacacaagcatttatcattttatgtgatcttgctctttctacaaaaatatttccacccttgcaccatgagatgatagaatgcaaattg |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7281558 |
gcaacacaatttgacacaagcatttatcattttatgtgatcttgctctttctacaaaaatatttccacccttgcaccatgagatgatagaatgcaaattg |
7281459 |
T |
|
| Q |
447 |
attgtcaacttatgaaatacagatctatagaatgggacatcatttcataattgtgaaaaatggaagatacggattagaattataccttgtagtggctggc |
546 |
Q |
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| T |
7281458 |
attgtcaacttatgaaatacagatctatagaatgggacatcatttcataattgtgaaaaatggaaggtatggattagaattataccttgtagtggctggc |
7281359 |
T |
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| Q |
547 |
tatatacaaggttgatatgttttgtgaagtagag |
580 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
7281358 |
tatatacaaggttgatatgttttgtgaagtagag |
7281325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 48 - 197
Target Start/End: Complemental strand, 7284752 - 7284604
Alignment:
| Q |
48 |
attgcacctcattttgatccaagctgcaatagtgactttagtaaaaagattagtcttatgggtaaacaatagtgacttgagataacatttaattttaacc |
147 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7284752 |
attgcacctcattttgatccaagctgcaatagtgactttagtaaaa-gattagtcttatgggtaaacaatagtgacttgagataacatttaattttaacc |
7284654 |
T |
|
| Q |
148 |
attgtgaattgttgtcttccaaagtagaaacatcaaatgattgtataata |
197 |
Q |
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| T |
7284653 |
attgtgaattgttgtcttccaaagtagaaacatcaaatgattgtataata |
7284604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 580 - 643
Target Start/End: Complemental strand, 7281292 - 7281226
Alignment:
| Q |
580 |
gctacaaaagccaagagtgatg---ccatatacataagagtatgtaatagtttttgagttaaataag |
643 |
Q |
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| T |
7281292 |
gctacaaaagccaagagtgatgatgccatatacataagagtatgtaatagtttttgagttaaataag |
7281226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 303 - 422
Target Start/End: Complemental strand, 17462001 - 17461882
Alignment:
| Q |
303 |
cctaacaatgtgctcccttaccattgttattgctttgttgtcacgcaacacaatttgacacaagcatttatcattttatgtgatcttgctctttctacaa |
402 |
Q |
| |
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|||||||| |||| |||||| |||| |||| |||| || ||||||||||| || |||||||||||||||||||| |||||| ||||||||||| || |
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| T |
17462001 |
cctaacaacgtgcacccttagcatttcaattgatttgccgttacgcaacacaagttcacacaagcatttatcattttctgtgattttgctctttctgcag |
17461902 |
T |
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| Q |
403 |
aaatatttccacccttgcac |
422 |
Q |
| |
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|||| || ||||||| |||| |
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| T |
17461901 |
aaatcttcccaccctcgcac |
17461882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 299 - 424
Target Start/End: Complemental strand, 17455861 - 17455736
Alignment:
| Q |
299 |
ccttcctaacaatgtgctcccttaccattgttattgctttgttgtcacgcaacacaatttgacacaagcatttatcattttatgtgatcttgctctttct |
398 |
Q |
| |
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|||||||||||||||| |||||| |||| |||||||| || |||| |||| || |||||||||| ||||||||| ||| ||||||| |||||| |
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| T |
17455861 |
ccttcctaacaatgtgaacccttatcatttctattgcttctccgttgcgcattacaagttcacacaagcatctatcattttctgttatcttgcactttct |
17455762 |
T |
|
| Q |
399 |
acaaaaatatttccacccttgcacca |
424 |
Q |
| |
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|||||||| || ||||||| |||||| |
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| T |
17455761 |
acaaaaatcttcccaccctagcacca |
17455736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 17392990 - 17393041
Alignment:
| Q |
371 |
tatcattttatgtgatcttgctctttctacaaaaatatttccacccttgcac |
422 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| || ||||||| |||| |
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| T |
17392990 |
tatcattttctgtgatcttgctctttctacaaaaatcttcccaccctagcac |
17393041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 542
Target Start/End: Complemental strand, 17455559 - 17455498
Alignment:
| Q |
481 |
ggacatcatttcataattgtgaaaaatggaagatacggattagaattataccttgtagtggc |
542 |
Q |
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|||||||||||||||||||||||||| || |||| |||||||| |||||||| |||||| |
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| T |
17455559 |
ggacatcatttcataattgtgaaaaaccaaatctacgaattagaatcataccttgcagtggc |
17455498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 347 - 406
Target Start/End: Original strand, 40234473 - 40234532
Alignment:
| Q |
347 |
gcaacacaatttgacacaagcatttatcattttatgtgatcttgctctttctacaaaaat |
406 |
Q |
| |
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||||||||| || |||||||||| ||||||||| ||| |||||||||||||||||||||| |
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| T |
40234473 |
gcaacacaacttcacacaagcatctatcattttctgtaatcttgctctttctacaaaaat |
40234532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 226 - 261
Target Start/End: Original strand, 40234360 - 40234396
Alignment:
| Q |
226 |
ataaaaatatttt-caaataaacaagtttcaagttaa |
261 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| |
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| T |
40234360 |
ataaaaatattttacaaataaacaagtttcaagttaa |
40234396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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