View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_high_21 (Length: 326)
Name: NF18549_high_21
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 7762704 - 7762395
Alignment:
| Q |
1 |
gcagaaaagactatggaagatccttccctgagttcaatgttttaggacaccgaagtctacaacaatagaacaaatgttgtacatatatataggatcaata |
100 |
Q |
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| T |
7762704 |
gcagaaaagactatggaagatccttccctgagttcaatgtttcaggacaccgaagtatacaacaatagaacaaatgttgtacatatatataggatcaata |
7762605 |
T |
|
| Q |
101 |
gttccaaattatgatctttgtcaatatgattgttatatattttacttaattatactctctttaatgatatcattaataaaataaccttttttctgagttt |
200 |
Q |
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| T |
7762604 |
gttccaaattatgatctttgtcaatatgattgttatatattttacttaattatactctctttaatgatatcattaataaaataaccttttttctgagttt |
7762505 |
T |
|
| Q |
201 |
agcaatattgcacataatcattttatccccactttcttttgatttatcattcttattgtatttctgtacagctatgaatatgagtttattgagaagattg |
300 |
Q |
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| T |
7762504 |
agcaatattgcacataatcattttatccccactttcttttgatttatcattcttattgtatttctgtacagctatgaatatgagtttattgagaagattg |
7762405 |
T |
|
| Q |
301 |
tcaaagagat |
310 |
Q |
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|||||||||| |
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| T |
7762404 |
tcaaagagat |
7762395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 301
Target Start/End: Complemental strand, 7838859 - 7838812
Alignment:
| Q |
254 |
tattgtatttctgtacagctatgaatatgagtttattgagaagattgt |
301 |
Q |
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| T |
7838859 |
tattgtatttctatgcagctatgaatctgagtttattgagaagattgt |
7838812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 305
Target Start/End: Complemental strand, 28297344 - 28297312
Alignment:
| Q |
273 |
tatgaatatgagtttattgagaagattgtcaaa |
305 |
Q |
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| T |
28297344 |
tatgaatatgagtttattgagaagatagtcaaa |
28297312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 305
Target Start/End: Original strand, 28514729 - 28514761
Alignment:
| Q |
273 |
tatgaatatgagtttattgagaagattgtcaaa |
305 |
Q |
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| T |
28514729 |
tatgaatatgagtttattgagaagatagtcaaa |
28514761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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