View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18549_high_26 (Length: 299)

Name: NF18549_high_26
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18549_high_26
NF18549_high_26
[»] chr7 (11 HSPs)
chr7 (17-286)||(4631379-4631648)
chr7 (39-283)||(4667396-4667634)
chr7 (152-214)||(4637378-4637440)
chr7 (152-214)||(4711584-4711646)
chr7 (152-214)||(4864446-4864508)
chr7 (150-227)||(4654004-4654081)
chr7 (152-216)||(4696702-4696766)
chr7 (153-216)||(4644214-4644277)
chr7 (158-227)||(4783353-4783422)
chr7 (158-227)||(4815782-4815851)
chr7 (150-214)||(4673224-4673288)
[»] chr4 (1 HSPs)
chr4 (39-286)||(18925144-18925385)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 286
Target Start/End: Complemental strand, 4631648 - 4631379
Alignment:
Q  17 ctatttttacccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttacccttctcaaagacttt 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631648 ctatttttatccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttacccttctcaaagacttt 4631549  T
Q  117 aatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631548 aatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 4631449  T
Q  217 aaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgccttc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631448 aaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgccttc 4631379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 39 - 283
Target Start/End: Complemental strand, 4667634 - 4667396
Alignment:
Q  39 tcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaa 138  Q
    ||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  || || ||||||||| |||    
T  4667634 tcgtatcaaaactttgaaacctccaacgctctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttagcccttcactttggcttccaa 4667535  T
Q  139 acgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaatt 238  Q
    |||||| ||||||||||||||||||||||||||| || |     | |   ||||| ||| || ||||||||||||||||      |||||||||||||||    
T  4667534 acgataacaagacaatcaccaaagaatattgcatccataccaaacaaggggagaaactagacgtaactttcattcccaa------aaacacaaaccaatt 4667441  T
Q  239 aaatggtttagctttcatcaacggaattgagattgtgtctatgcc 283  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||    
T  4667440 aaatgcttttgctttcatcaacggaattgagattgtgtctatgcc 4667396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 4637440 - 4637378
Alignment:
Q  152 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 214  Q
    |||||||||||||||||||||||||||    |||||||| ||| |||||||||||||||||||    
T  4637440 aatcaccaaagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcc 4637378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 4711584 - 4711646
Alignment:
Q  152 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 214  Q
    ||||||||||||||||||||| |||||    |||||||||||||||| |||||||||||||||    
T  4711584 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcc 4711646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 4864508 - 4864446
Alignment:
Q  152 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 214  Q
    ||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||    
T  4864508 aatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattcc 4864446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 4654081 - 4654004
Alignment:
Q  150 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 227  Q
    ||||||||||||||||||||||| ||| |    || ||| |||||||||||||||||||||||||||| || ||||||    
T  4654081 acaatcaccaaagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcccaacaacacaaac 4654004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 4696702 - 4696766
Alignment:
Q  152 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 216  Q
    ||||||||||||||||||||| ||||     |||||||||||| |||||||||||||||||||||    
T  4696702 aatcaccaaagaatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattccca 4696766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 4644277 - 4644214
Alignment:
Q  153 atcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 216  Q
    |||| |||||| |||||||| ||||||    |||||||||||||||||||||||||||||||||    
T  4644277 atcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattccca 4644214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 4783353 - 4783422
Alignment:
Q  158 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 227  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| || ||||||    
T  4783353 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaac 4783422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 4815782 - 4815851
Alignment:
Q  158 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 227  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| || ||||||    
T  4815782 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaac 4815851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 4673288 - 4673224
Alignment:
Q  150 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 214  Q
    |||||||||||||||| ||| || |||||    || ||||||||||||||||||| |||||||||    
T  4673288 acaatcaccaaagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattcc 4673224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 286
Target Start/End: Original strand, 18925144 - 18925385
Alignment:
Q  39 tcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaa 138  Q
    ||||||||| || ||||||||| | ||||||||||||| |||||||| ||||||||  | ||||||||||| |||||||| ||| | |||||||||  ||    
T  18925144 tcgtatcaaaactttgaaaccttcgacgccctcttcaccgtcaaagttggaaccaatgtcacccttctcaatgactttaaccccgcactttggcttcaaa 18925243  T
Q  139 acgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaatt 238  Q
    |||||| |||||||||||| ||||| || ||| |  ||||    |||| ||||||| |||| ||||||||||||||   ||| ||   || ||| |||      
T  18925244 acgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaactgagaagttaaatataactttcattcc---aaacac---cataaatcaacc 18925337  T
Q  239 aaatggtttagctttcatcaacggaattgagattgtgtctatgccttc 286  Q
    ||| | ||  ||||||||||||||||||||||| ||||| ||||||||    
T  18925338 aaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttc 18925385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University