View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18549_high_28 (Length: 294)

Name: NF18549_high_28
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18549_high_28
NF18549_high_28
[»] chr4 (5 HSPs)
chr4 (127-191)||(48092096-48092160)
chr4 (8-70)||(48092215-48092277)
chr4 (212-271)||(48091435-48091493)
chr4 (175-220)||(48092034-48092079)
chr4 (128-204)||(48081753-48081830)


Alignment Details
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 48092160 - 48092096
Alignment:
Q  127 ctggttagatattaattaagacggaccacggccaatatttcataattcatggtccagctaaaaat 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48092160 ctggttagatattaattaagacggaccacggccaatatttcataattcatgatccagctaaaaat 48092096  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 48092277 - 48092215
Alignment:
Q  8 agattattctcgtatgaaagaattcaattccaaatagatgtcatgtcatataagcattaactc 70  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48092277 agattcttctcgtatgaaagaatccaattccaaatagatgtcatgtcatataagcattaactc 48092215  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 48091493 - 48091435
Alignment:
Q  212 ttcatataactatgaaattatatgatagtagtagttttctcttacatgagtcatgaggta 271  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  48091493 ttcatataactatgaaattac-tgatagtagtagttttctcttacatgagtcatgaggta 48091435  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 48092079 - 48092034
Alignment:
Q  175 atggtccagctaaaaatctaaccaaatcaaaattgaattcatataa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  48092079 atggtccagctaaaaatctaaccaaatcaaaattgaattcatataa 48092034  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 48081830 - 48081753
Alignment:
Q  128 tggttagatattaattaaga-cggaccacggccaatatttcataattcatggtccagctaaaaatctaaccaaatcaa 204  Q
    |||||||||||||||||||  ||||| ||||||||||| ||| ||||||||  | ||||||||||||||| |||||||    
T  48081830 tggttagatattaattaagggcggacgacggccaatatctcaaaattcatgacctagctaaaaatctaacgaaatcaa 48081753  T

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