View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_high_3 (Length: 638)
Name: NF18549_high_3
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 19 - 628
Target Start/End: Complemental strand, 8647759 - 8647152
Alignment:
| Q |
19 |
acatcttccacatgatcattacatctataacacataggagacaaaactataccgcgatggtgcaaaagcgcattagtggggagtgaatcatgactagcgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8647759 |
acatcttccacatgatcattacatctataacacataggagacaaaactataccgcgatggtgcaaaagcgcattagtggggagtgaatcatgactagcgg |
8647660 |
T |
|
| Q |
119 |
tccaaaatagaagcttgatcttctccagggctttcatagttggaaactgcttacgaagaaaagtcaatataattacacactccatgtggctatctagaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
8647659 |
tccaaaatagaagcttgatcttctccagggctttcatagttggaaactgcttacgaagaaaagtcaatataattacacactccatgtggctatccagaat |
8647560 |
T |
|
| Q |
219 |
agttggaaactagtttttctccatcactacttctgaaactcgtgctgaaaatcaaagtggaatcggtggttatttatgttgttgcttggcaggtgttttc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8647559 |
agttggaaactagtttttctccatcactacttctgaaactcgtgctgaaaatcaaagtggaatcggtggttatttatgttgttgcttggcaggtgttttc |
8647460 |
T |
|
| Q |
319 |
aaaatatgtgaataagtggattgccttggcttgcccttttcaaggtaattccttttcctctgtttttacgtgcttccttttctttggtgttaatttatct |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8647459 |
aaaatatgtgaataagtggattgccttggcttgcccttttcaaggtaattccttttc--ctgtttttacgtgcttccttttctttggtgttaatttatct |
8647362 |
T |
|
| Q |
419 |
aatttatttagtacatagtcaattttattggtccatgattcgaagtttaaaaacatttggatatgaacatacccttctggatagccatatgattattaaa |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8647361 |
aatttatttagtacatagtcaattttattggtccatgattcgaagtttaaaaacatttggatatgaacatacccttctggatagccatatgattattaaa |
8647262 |
T |
|
| Q |
519 |
ttaaatgtgaatttcataagatgaattggaaactattcttaatggtacttaattttttataagtatgccattctatgactagttatctttatcttccatt |
618 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8647261 |
ttaaatgtgaatttcatgagatgaattggaaactattcttaatggtacttaattttttataagtatgccattctatgactagttatctttatcttccatt |
8647162 |
T |
|
| Q |
619 |
cttatctgtg |
628 |
Q |
| |
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||||| |||| |
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| T |
8647161 |
cttatttgtg |
8647152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 264 - 623
Target Start/End: Original strand, 30607061 - 30607409
Alignment:
| Q |
264 |
tgaaaatcaaagtggaatcggtggttatttatgttgttgcttggcaggtgttttcaaaatatgtgaataagtggattgccttggcttgcccttttcaagg |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30607061 |
tgaaaatcaaagtggaatcggtggttatttatgttgttgcttggcaggtgttttcaaaatacgtgaataagtggattgccttggcttgcccttttcaagg |
30607160 |
T |
|
| Q |
364 |
taattccttttcctctgtttttacgtgcttccttttctttggtgttaatttatctaatttatttagtacatagtcaattttattggtccatgattcgaag |
463 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
30607161 |
taattccttttcttctgtttttacgtgcttccttttctttggtgt----------aatttgtttagtacatagtcaattttattggtccatgactcgaag |
30607250 |
T |
|
| Q |
464 |
tttaaaaacatttggatatgaacatacccttctggatagccatatgattattaaattaaatgtgaatttcataagatgaattggaaactattcttaatgg |
563 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| |
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|
| T |
30607251 |
tttaaaaacatttggatatgaacat-ccctttttgatagccatttgattattaaattaaatgtgaatttcatgagatgaattggaaaatattattaatgg |
30607349 |
T |
|
| Q |
564 |
tacttaattttttataagtatgccattctatgactagttatctttatcttccattcttat |
623 |
Q |
| |
|
||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
30607350 |
tacttaattattgataagtatgtcattctatgactagttatctttatcttccattcttat |
30607409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 19722056 - 19721920
Alignment:
| Q |
19 |
acatcttccacatgatcattacatctataacacataggagacaaaactataccgcgatggtgcaaaagcgcattagtggggagtgaatcatgactagcgg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||| |||| ||||||| |
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| T |
19722056 |
acatcttccacatgatcattacatctataacacataggagacaaaaccataccgcgacggtgcaaaagcgctttagtggggagtgaaacatggctagcgg |
19721957 |
T |
|
| Q |
119 |
tccaaaatagaagcttgatcttctccagggctttcat |
155 |
Q |
| |
|
||||||| || | |||||||||||| |||||||||| |
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|
| T |
19721956 |
tccaaaaaaggaacttgatcttctctggggctttcat |
19721920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 9e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 29312576 - 29312451
Alignment:
| Q |
19 |
acatcttccacatgatcattacatctataacacataggagacaaaactataccgcgatggtgcaaaagcgcattagtggggagtgaatcatgactagcgg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| | ||||||||||| ||||||||||||| || |
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| T |
29312576 |
acatcttccacatgatcattacatctataacacataggagacaaaaccataccgcgacggtgcaaaagcactttagtggggagcgaatcatgactagtgg |
29312477 |
T |
|
| Q |
119 |
tccaaaatagaagcttgatcttctcc |
144 |
Q |
| |
|
||||||| | | ||||||||||||| |
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|
| T |
29312476 |
tccaaaagaacaacttgatcttctcc |
29312451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 12288602 - 12288726
Alignment:
| Q |
19 |
acatcttccacatgatcattacatctataacacataggagacaaaactataccgcgatggtgcaaaagcgcattagt-ggggagtgaatcatgactagcg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| || |
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|
| T |
12288602 |
acatcttccacatgatcattacatctatagcacacaggagacaaaaccataccgcgatggtgcaaaagcgctttagtgggggagtgaatcatgactaacg |
12288701 |
T |
|
| Q |
118 |
gtccaaaatagaagcttgatcttct |
142 |
Q |
| |
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|||||||| || | ||||||||||| |
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|
| T |
12288702 |
gtccaaaaaagcaacttgatcttct |
12288726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 3632536 - 3632618
Alignment:
| Q |
19 |
acatcttccacatgatcattacatctataacacataggagacaaaactataccgcgatggtgcaaaagcgcattagtggggag |
101 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||| |||| ||||| | ||| |||||||||| |||| || ||||||||||| |
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|
| T |
3632536 |
acattttcaacatgatcattacatctatggcacaaaggatacaaagccatatcgcgatggtgtaaaaatgctttagtggggag |
3632618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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